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Extensive post-transcriptional regulation of microRNAs and its implications for cancer
J. Michael Thomson1,
Martin Newman1,
Joel S. Parker4,
Elizabeth M. Morin-Kensicki1,
Tricia Wright2, and
Scott M. Hammond1,3,5
1 Department of Cell and Developmental Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA; 2 Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA; 3 Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina 27599, USA; 4 Constella Group, Durham, North Carolina 27713, USA
Abstract:
MicroRNAs (miRNAs) are short, noncoding RNAs that post-transcriptionallyregulate gene expression. While hundreds of mammalian miRNAgenes have been identified, little is known about the pathwaysthat regulate the production of active miRNA species. Here weshow that a large fraction of miRNA genes are regulated post-transcriptionally.During early mouse development, many miRNA primary transcripts,including the Let-7 family, are present at high levels but arenot processed by the enzyme Drosha. An analysis of gene expressionin primary tumors indicates that the widespread down-regulationof miRNAs observed in cancer is due to a failure at the Droshaprocessing step. These data uncover a novel regulatory stepin miRNA function and provide a mechanism for miRNA down-regulationin cancer.
The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans.
M. C. Ow, N. J. Martinez, P. H. Olsen, H. S. Silverman, M. I. Barrasa, B. Conradt, A. J.M. Walhout, and V. Ambros (2008)
Genes & Dev.
22, 2520-2534
|Abstract »|Full Text »|PDF »
Frequency and fate of microRNA editing in human brain.
Y. Kawahara, M. Megraw, E. Kreider, H. Iizasa, L. Valente, A. G. Hatzigeorgiou, and K. Nishikura (2008)
Nucleic Acids Res.
36, 5270-5280
|Abstract »|Full Text »|PDF »
Role of microRNAs in vascular diseases, inflammation, and angiogenesis.
C. Urbich, A. Kuehbacher, and S. Dimmeler (2008)
Cardiovasc Res
79, 581-588
|Abstract »|Full Text »|PDF »
Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing.
Genomic Profiling of MicroRNA and Messenger RNA Reveals Deregulated MicroRNA Expression in Prostate Cancer.
S. Ambs, R. L. Prueitt, M. Yi, R. S. Hudson, T. M. Howe, F. Petrocca, T. A. Wallace, C.-G. Liu, S. Volinia, G. A. Calin, et al. (2008)
Cancer Res.
68, 6162-6170
|Abstract »|Full Text »|PDF »
Diagnostic and Prognostic MicroRNAs in Stage II Colon Cancer.
T. Schepeler, J. T. Reinert, M. S. Ostenfeld, L. L. Christensen, A. N. Silahtaroglu, L. Dyrskjot, C. Wiuf, F. J. Sorensen, M. Kruhoffer, S. Laurberg, et al. (2008)
Cancer Res.
68, 6416-6424
|Abstract »|Full Text »|PDF »
Determinants of MicroRNA Processing Inhibition by the Developmentally Regulated RNA-binding Protein Lin28.
E. Piskounova, S. R. Viswanathan, M. Janas, R. J. LaPierre, G. Q. Daley, P. Sliz, and R. I. Gregory (2008)
J. Biol. Chem.
283, 21310-21314
|Abstract »|Full Text »|PDF »
Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production.
Inducible expression of microRNA-194 is regulated by HNF-1{alpha} during intestinal epithelial cell differentiation.
K. Hino, K. Tsuchiya, T. Fukao, K. Kiga, R. Okamoto, T. Kanai, and M. Watanabe (2008)
RNA
14, 1433-1442
|Abstract »|Full Text »|PDF »
Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer.
L. Zhang, S. Volinia, T. Bonome, G. A. Calin, J. Greshock, N. Yang, C.-G. Liu, A. Giannakakis, P. Alexiou, K. Hasegawa, et al. (2008)
PNAS
105, 7004-7009
|Abstract »|Full Text »|PDF »
Epithelial Progenitor Cells of the Embryonic Lung and the Role of MicroRNAs in Their Proliferation.
Y. Lu, T. Okubo, E. Rawlins, and B. L. M. Hogan (2008)
Proceedings of the ATS
5, 300-304
|Abstract »|Full Text »|PDF »
Selective Blockade of MicroRNA Processing by Lin28.
S. R. Viswanathan, G. Q. Daley, and R. I. Gregory (2008)
Science
320, 97-100
|Abstract »|Full Text »|PDF »
Exploration of Tumor-Suppressive MicroRNAs Silenced by DNA Hypermethylation in Oral Cancer.
K.-i. Kozaki, I. Imoto, S. Mogi, K. Omura, and J. Inazawa (2008)
Cancer Res.
68, 2094-2105
|Abstract »|Full Text »|PDF »
Gene Regulation by Transcription Factors and MicroRNAs.
MicroRNA-137 Targets Microphthalmia-Associated Transcription Factor in Melanoma Cell Lines.
L. T. Bemis, R. Chen, C. M. Amato, E. H. Classen, S. E. Robinson, D. G. Coffey, P. F. Erickson, Y. G. Shellman, and W. A. Robinson (2008)
Cancer Res.
68, 1362-1368
|Abstract »|Full Text »|PDF »
Development of a Dual-Luciferase Reporter System for In Vivo Visualization of MicroRNA Biogenesis and Posttranscriptional Regulation.
J. Y. Lee, S. Kim, D. W. Hwang, J. M. Jeong, J.-K. Chung, M. C. Lee, and D. S. Lee (2008)
J. Nucl. Med.
49, 285-294
|Abstract »|Full Text »|PDF »
Systematic evaluation of microRNA processing patterns in tissues, cell lines, and tumors.
E. J. Lee, M. Baek, Y. Gusev, D. J. Brackett, G. J. Nuovo, and T. D. Schmittgen (2008)
RNA
14, 35-42
|Abstract »|Full Text »|PDF »
MicroRNA-378 promotes cell survival, tumor growth, and angiogenesis by targeting SuFu and Fus-1 expression.
D. Y. Lee, Z. Deng, C.-H. Wang, and B. B. Yang (2007)
PNAS
104, 20350-20355
|Abstract »|Full Text »|PDF »
MicroRNAs as Potential Agents to Alter Resistance to Cytotoxic Anticancer Therapy.
J. B. Weidhaas, I. Babar, S. M. Nallur, P. Trang, S. Roush, M. Boehm, E. Gillespie, and F. J. Slack (2007)
Cancer Res.
67, 11111-11116
|Abstract »|Full Text »|PDF »
A simple array platform for microRNA analysis and its application in mouse tissues.
X. Tang, J. Gal, X. Zhuang, W. Wang, H. Zhu, and G. Tang (2007)
RNA
13, 1803-1822
|Abstract »|Full Text »|PDF »
MicroRNA-34b and MicroRNA-34c Are Targets of p53 and Cooperate in Control of Cell Proliferation and Adhesion-Independent Growth.
D. C. Corney, A. Flesken-Nikitin, A. K. Godwin, W. Wang, and A. Yu. Nikitin (2007)
Cancer Res.
67, 8433-8438
|Abstract »|Full Text »|PDF »
GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.
Y. Zhang, S.-M. Luoh, L. S. Hon, R. Baertsch, W. I. Wood, and Z. Zhang (2007)
Nucleic Acids Res.
35, W152-W158
|Abstract »|Full Text »|PDF »
MicroRNA Expression Profiling in Prostate Cancer.
K. P. Porkka, M. J. Pfeiffer, K. K. Waltering, R. L. Vessella, T. L.J. Tammela, and T. Visakorpi (2007)
Cancer Res.
67, 6130-6135
|Abstract »|Full Text »|PDF »
Expression of the miR-17-92 polycistron in chronic myeloid leukemia (CML) CD34+ cells.
L. Venturini, K. Battmer, M. Castoldi, B. Schultheis, A. Hochhaus, M. U. Muckenthaler, A. Ganser, M. Eder, and M. Scherr (2007)
Blood
109, 4399-4405
|Abstract »|Full Text »|PDF »
Epigenetic gene silencing in cancer: the DNA hypermethylome.
Transcripts Targeted by the MicroRNA-16 Family Cooperatively Regulate Cell Cycle Progression.
P. S. Linsley, J. Schelter, J. Burchard, M. Kibukawa, M. M. Martin, S. R. Bartz, J. M. Johnson, J. M. Cummins, C. K. Raymond, H. Dai, et al. (2007)
Mol. Cell. Biol.
27, 2240-2252
|Abstract »|Full Text »|PDF »
The imprinted H19 noncoding RNA is a primary microRNA precursor.
Overexpression of Dicer in Precursor Lesions of Lung Adenocarcinoma.
S. Chiosea, E. Jelezcova, U. Chandran, J. Luo, G. Mantha, R. W. Sobol, and S. Dacic (2007)
Cancer Res.
67, 2345-2350
|Abstract »|Full Text »|PDF »
Genetic Unmasking of an Epigenetically Silenced microRNA in Human Cancer Cells.
A. Lujambio, S. Ropero, E. Ballestar, M. F. Fraga, C. Cerrato, F. Setien, S. Casado, A. Suarez-Gauthier, M. Sanchez-Cespedes, A. Gitt, et al. (2007)
Cancer Res.
67, 1424-1429
|Abstract »|Full Text »|PDF »
Misexpression of the Caenorhabditis elegans miRNA let-7 Is Sufficient to Drive Developmental Programs.
G.D. HAYES and G. RUVKUN (2006)
Cold Spring Harb Symp Quant Biol
71, 21-27
|Abstract »|PDF »
Drosha in Primary MicroRNA Processing.
Y. LEE, J. HAN, K.-H. YEOM, H. JIN, and V.N. KIM (2006)
Cold Spring Harb Symp Quant Biol
71, 51-57
|Abstract »|PDF »
Substrate Selectivity of Exportin 5 and Dicer in the Biogenesis of MicroRNAs.
E. LUND and J.E. DAHLBERG (2006)
Cold Spring Harb Symp Quant Biol
71, 59-66
|Abstract »|PDF »
The Expanding Universe of Noncoding RNAs.
G.J. HANNON, F.V. RIVAS, E.P. MURCHISON, and J.A. STEITZ (2006)
Cold Spring Harb Symp Quant Biol
71, 551-564
|Abstract »|PDF »