Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.


Logo for

Annu. Rev. Physiol. 63 (1): 757-794

Copyright © 2001 by Annual Reviews.

Annu. Rev. Physiol. 2001. 63:757-794. GENETIC AND MOLECULAR ANALYSIS OF CIRCADIAN RHYTHMS IN NEUROSPORA Jennifer J Loros1 and Jay C Dunlap2 Departments of 1Biochemistry Dartmouth Medical School, Hanover, New Hampshire 03755; e-mail: jennifer.loros{at}dartmouth.edu Departments of 12Genetics, Dartmouth Medical School, Hanover, New Hampshire 03755; jay.c.dunlap{at}dartmouth.edu frq, wc-1, wc-2, clock genes

Over the course of the past 40 years Neurospora has become a well-known and uniquely tractable model system for the analysis of the molecular basis of eukaryotic circadian oscillatory systems. Molecular bases for the period length and sustainability of the rhythm, light, and temperature resetting of the circadian system and for gating of light input and light effects are becoming understood, and Neurospora promises to be a suitable system for examining the role of coupled feedback loops in the clock. Many of these insights have shown or foreshadow direct parallels in mammalian systems, including the mechanism of light entrainment, the involvement of PAS:PAS heterodimers as transcriptional activators in essential clock-associated feedback loops, and dual role of FRQ in the loop as an activator and a repressor; similarities extend to the primary sequence level in at least one case, that of WC-1 and BMAL1. Work on circadian output in Neurospora has identified more than a dozen regulated genes and has been at the forefront of studies aimed at understanding clock control of gene expression.

THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Stoichiometric Relationship among Clock Proteins Determines Robustness of Circadian Rhythms.
Y. Lee, R. Chen, H.-m. Lee, and C. Lee (2011)
J. Biol. Chem. 286, 7033-7042
   Abstract »    Full Text »    PDF »
A circadian rhythm regulating hyphal melanization in Cercospora kikuchii.
B. H. Bluhm, A. M. Burnham, and L. D. Dunkle (2010)
Mycologia 102, 1221-1228
   Abstract »    Full Text »    PDF »
Reproduction without sex: conidiation in the filamentous fungus Trichoderma.
J. M. Steyaert, R. J. Weld, A. Mendoza-Mendoza, and A. Stewart (2010)
Microbiology 156, 2887-2900
   Abstract »    Full Text »    PDF »
Effects of prd Circadian Clock Mutations on FRQ-Less Rhythms in Neurospora.
S. Li and P. Lakin-Thomas (2010)
J Biol Rhythms 25, 71-80
   Abstract »    PDF »
The diversity and evolution of circadian clock proteins in fungi.
L. Salichos and A. Rokas (2010)
Mycologia 102, 269-278
   Abstract »    Full Text »    PDF »
Protein kinase A and casein kinases mediate sequential phosphorylation events in the circadian negative feedback loop.
G. Huang, S. Chen, S. Li, J. Cha, C. Long, L. Li, Q. He, and Y. Liu (2007)
Genes & Dev. 21, 3283-3295
   Abstract »    Full Text »    PDF »
Quantitative Trait Loci for the Circadian Clock in Neurospora crassa.
T.-S. Kim, B. A. Logsdon, S. Park, J. G. Mezey, and K. Lee (2007)
Genetics 177, 2335-2347
   Abstract »    Full Text »    PDF »
Circadian rhythmicity mediated by temporal regulation of the activity of p38 MAPK.
M. W. Vitalini, R. M. de Paula, C. S. Goldsmith, C. A. Jones, K. A. Borkovich, and D. Bell-Pedersen (2007)
PNAS 104, 18223-18228
   Abstract »    Full Text »    PDF »
Circadian Output, Input, and Intracellular Oscillators: Insights into the Circadian Systems of Single Cells.
J. J. Loros, J. C. Dunlap, L. F. Larrondo, M. Shi, W. J. Belden, V. D. Gooch, C.-H. Chen, C. L. Baker, A. Mehra, H. V. Colot, et al. (2007)
Cold Spring Harb Symp Quant Biol 72, 201-214
   Abstract »    PDF »
Complexity of the Neurospora crassa Circadian Clock System: Multiple Loops and Oscillators.
R. M. de Paula, M. W. Vitalini, R. H. Gomer, and D. Bell-Pedersen (2007)
Cold Spring Harb Symp Quant Biol 72, 345-351
   Abstract »    PDF »
Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa.
M. Murakami, Y. Tago, T. Yamashino, and T. Mizuno (2007)
Plant Cell Physiol. 48, 110-121
   Abstract »    Full Text »    PDF »
The Rhythms of Life: Circadian Output Pathways in Neurospora.
M. W. Vitalini, R. M. de Paula, W. D. Park, and D. Bell-Pedersen (2006)
J Biol Rhythms 21, 432-444
   Abstract »    PDF »
CKI and CKII mediate the FREQUENCY-dependent phosphorylation of the WHITE COLLAR complex to close the Neurospora circadian negative feedback loop.
Q. He, J. Cha, Q. He, H.-C. Lee, Y. Yang, and Y. Liu (2006)
Genes & Dev. 20, 2552-2565
   Abstract »    Full Text »    PDF »
Circadian Rhythms in Neurospora crassa and Other Filamentous Fungi.
Y. Liu and D. Bell-Pedersen (2006)
Eukaryot. Cell 5, 1184-1193
   Full Text »    PDF »
Two Circadian Timing Circuits in Neurospora crassa Cells Share Components and Regulate Distinct Rhythmic Processes.
R. M. de Paula, Z. A. Lewis, A. V. Greene, K. S. Seo, L. W. Morgan, M. W. Vitalini, L. Bennett, R. H. Gomer, and D. Bell-Pedersen (2006)
J Biol Rhythms 21, 159-168
   Abstract »    PDF »
Circadian clock genes frequency and white collar-1 are not essential for entrainment to temperature cycles in Neurospora crassa.
P. L. Lakin-Thomas (2006)
PNAS 103, 4469-4474
   Abstract »    Full Text »    PDF »
The relationship between FRQ-protein stability and temperature compensation in the Neurospora circadian clock.
P. Ruoff, J. J. Loros, and J. C. Dunlap (2005)
PNAS 102, 17681-17686
   Abstract »    Full Text »    PDF »
Genetic and Molecular Analysis of Phytochromes from the Filamentous Fungus Neurospora crassa.
A. C. Froehlich, B. Noh, R. D. Vierstra, J. Loros, and J. C. Dunlap (2005)
Eukaryot. Cell 4, 2140-2152
   Abstract »    Full Text »    PDF »
Pseudo-Response Regulators (PRRs) or True Oscillator Components (TOCs).
T. Mizuno and N. Nakamichi (2005)
Plant Cell Physiol. 46, 677-685
   Abstract »    Full Text »    PDF »
A Novel Mutation in kaiC Affects Resetting of the Cyanobacterial Circadian Clock.
Y. B. Kiyohara, M. Katayama, and T. Kondo (2005)
J. Bacteriol. 187, 2559-2564
   Abstract »    Full Text »    PDF »
PSEUDO-RESPONSE REGULATOR 7 and 9 Are Partially Redundant Genes Essential for the Temperature Responsiveness of the Arabidopsis Circadian Clock.
P. A. Salome and C. R. McClung (2005)
PLANT CELL 17, 791-803
   Abstract »    Full Text »    PDF »
From The Cover: Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles.
A. M. Pregueiro, N. Price-Lloyd, D. Bell-Pedersen, C. Heintzen, J. J. Loros, and J. C. Dunlap (2005)
PNAS 102, 2210-2215
   Abstract »    Full Text »    PDF »
Regulation of the Neurospora circadian clock by an RNA helicase.
P. Cheng, Q. He, Q. He, L. Wang, and Y. Liu (2005)
Genes & Dev. 19, 234-241
   Abstract »    Full Text »    PDF »
A Genetic Selection for Circadian Output Pathway Mutations in Neurospora crassa.
M. W. Vitalini, L. W. Morgan, I. J. March, and D. Bell-Pedersen (2004)
Genetics 167, 119-129
   Abstract »    Full Text »    PDF »
Lessons from the Genome Sequence of Neurospora crassa: Tracing the Path from Genomic Blueprint to Multicellular Organism.
K. A. Borkovich, L. A. Alex, O. Yarden, M. Freitag, G. E. Turner, N. D. Read, S. Seiler, D. Bell-Pedersen, J. Paietta, N. Plesofsky, et al. (2004)
Microbiol. Mol. Biol. Rev. 68, 1-108
   Abstract »    Full Text »    PDF »
Light-regulated asexual reproduction in Paecilomyces fumosoroseus.
R. I. Sanchez-Murillo, M. de la Torre-Martinez, J. Aguirre-Linares, and A. Herrera-Estrella (2004)
Microbiology 150, 311-319
   Abstract »    Full Text »    PDF »
Distinct roles for PP1 and PP2A in the Neurospora circadian clock.
Y. Yang, Q. He, P. Cheng, P. Wrage, O. Yarden, and Y. Liu (2004)
Genes & Dev. 18, 255-260
   Abstract »    Full Text »    PDF »
Global gene repression by KaiC as a master process of prokaryotic circadian system.
Y. Nakahira, M. Katayama, H. Miyashita, S. Kutsuna, H. Iwasaki, T. Oyama, and T. Kondo (2004)
PNAS 101, 881-885
   Abstract »    Full Text »    PDF »
Neurospora in temperate forests of western North America.
D. J. Jacobson, A. J. Powell, J. R. Dettman, G. S. Saenz, M. M. Barton, M. D. Hiltz, W. H. Dvorachek Jr., N. L. Glass, J. W. Taylor, and D. O. Natvig (2004)
Mycologia 96, 66-74
   Abstract »    Full Text »    PDF »
Molecular Mechanism of Mammalian Circadian Clock.
Y. Isojima, N. Okumura, and K. Nagai (2003)
J. Biochem. 134, 777-784
   Abstract »    Full Text »    PDF »
Multiple oscillators regulate circadian gene expression in Neurospora.
A. Correa, Z. A. Lewis, A. V. Greene, I. J. March, R. H. Gomer, and D. Bell-Pedersen (2003)
PNAS 100, 13597-13602
   Abstract »    Full Text »    PDF »
Phosphorylation of FREQUENCY Protein by Casein Kinase II Is Necessary for the Function of the Neurospora Circadian Clock.
Y. Yang, P. Cheng, Q. He, L. Wang, and Y. Liu (2003)
Mol. Cell. Biol. 23, 6221-6228
   Abstract »    Full Text »    PDF »
Circadian Rhythms in Neurospora Crassa: Farnesol or Geraniol Allow Expression of Rhythmicity in the Otherwise Arrhythmic Strains frq 10, wc-1, and wc-2.
T. Granshaw, M. Tsukamoto, and S. Brody (2003)
J Biol Rhythms 18, 287-296
   Abstract »    PDF »
The frequency Gene Is Required for Temperature-Dependent Regulation of Many Clock-Controlled Genes in Neurospora crassa.
M. Nowrousian, G. E. Duffield, J. J. Loros, and J. C. Dunlap (2003)
Genetics 164, 923-933
   Abstract »    Full Text »    PDF »
Toward a detailed computational model for the mammalian circadian clock.
J.-C. Leloup and A. Goldbeter (2003)
PNAS 100, 7051-7056
   Abstract »    Full Text »    PDF »
Molecular Mechanisms of Entrainment in the Neurospora Circadian Clock.
Y. Liu (2003)
J Biol Rhythms 18, 195-205
   Abstract »    PDF »
Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY.
A. C. Froehlich, J. J. Loros, and J. C. Dunlap (2003)
PNAS 100, 5914-5919
   Abstract »    Full Text »    PDF »
Functional conservation of light, oxygen, or voltage domains in light sensing.
P. Cheng, Q. He, Y. Yang, L. Wang, and Y. Liu (2003)
PNAS 100, 5938-5943
   Abstract »    Full Text »    PDF »
A Circadian Oscillator in Aspergillus spp. Regulates Daily Development and Gene Expression.
A. V. Greene, N. Keller, H. Haas, and D. Bell-Pedersen (2003)
Eukaryot. Cell 2, 231-237
   Abstract »    Full Text »    PDF »
ldpA Encodes an Iron-Sulfur Protein Involved in Light-Dependent Modulation of the Circadian Period in the Cyanobacterium Synechococcuselongatus PCC 7942.
M. Katayama, T. Kondo, J. Xiong, and S. S. Golden (2003)
J. Bacteriol. 185, 1415-1422
   Abstract »    Full Text »    PDF »
WHITE COLLAR-1, a Multifunctional Neurospora Protein Involved in the Circadian Feedback Loops, Light Sensing, and Transcription Repression of wc-2.
P. Cheng, Y. Yang, L. Wang, Q. He, and Y. Liu (2003)
J. Biol. Chem. 278, 3801-3808
   Abstract »    Full Text »    PDF »
Roles for WHITE COLLAR-1 in Circadian and General Photoperception in Neurospora crassa.
K. Lee, J. C. Dunlap, and J. J. Loros (2003)
Genetics 163, 103-114
   Abstract »    Full Text »    PDF »
Life before the Clock: Modeling Circadian Evolution.
T. Roenneberg and M. Merrow (2002)
J Biol Rhythms 17, 495-505
   Abstract »    PDF »
White Collar-1, a Circadian Blue Light Photoreceptor, Binding to the frequency Promoter.
A. C. Froehlich, Y. Liu, J. J. Loros, and J. C. Dunlap (2002)
Science 297, 815-819
   Abstract »    Full Text »    PDF »
The out of phase 1 Mutant Defines a Role for PHYB in Circadian Phase Control in Arabidopsis.
P. A. Salome, T. P. Michael, E. V. Kearns, A. G. Fett-Neto, R. A. Sharrock, and C. R. McClung (2002)
Plant Physiology 129, 1674-1685
   Abstract »    Full Text »    PDF »
Regulation of the Neurospora circadian clock by casein kinase II.
Y. Yang, P. Cheng, and Y. Liu (2002)
Genes & Dev. 16, 994-1006
   Abstract »    Full Text »    PDF »
Distinct Signaling Pathways from the Circadian Clock Participate in Regulation of Rhythmic Conidiospore Development in Neurospora crassa.
A. Correa and D. Bell-Pedersen (2002)
Eukaryot. Cell 1, 273-280
   Abstract »    Full Text »    PDF »
Neurospora Clock-Controlled Gene 9 (ccg-9) Encodes Trehalose Synthase: Circadian Regulation of Stress Responses and Development.
M. L. Shinohara, A. Correa, D. Bell-Pedersen, J. C. Dunlap, and J. J. Loros (2002)
Eukaryot. Cell 1, 33-43
   Abstract »    Full Text »    PDF »
Identification of Circadian-Clock-Regulated Enhancers and Genes of Drosophila melanogaster by Transposon Mobilization and Luciferase Reporting of Cyclical Gene Expression.
T. Stempfl, M. Vogel, G. Szabo, C. Wulbeck, J. Liu, J. C. Hall, and R. Stanewsky (2002)
Genetics 160, 571-593
   Abstract »    Full Text »    PDF »
PAS Domain-Mediated WC-1/WC-2 Interaction Is Essential for Maintaining the Steady-State Level of WC-1 and the Function of Both Proteins in Circadian Clock and Light Responses of Neurospora.
P. Cheng, Y. Yang, K. H. Gardner, and Y. Liu (2002)
Mol. Cell. Biol. 22, 517-524
   Abstract »    Full Text »    PDF »
Book Review: Molecular Regulation of Circadian Rhythms in Drosophila and Mammals.
E. L. Meyer-Bernstein and A. Sehgal (2001)
Neuroscientist 7, 496-505
   Abstract »    PDF »
Circadian Clock-Specific Roles for the Light Response Protein WHITE COLLAR-2.
M. A. Collett, J. C. Dunlap, and J. J. Loros (2001)
Mol. Cell. Biol. 21, 2619-2628
   Abstract »    Full Text »    PDF »

To Advertise     Find Products


Science Signaling. ISSN 1937-9145 (online), 1945-0877 (print). Pre-2008: Science's STKE. ISSN 1525-8882