Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.

Subscribe

Logo for

Science 297 (5583): 1018-1023

Copyright © 2002 by the American Association for the Advancement of Science

MAP Kinase Phosphatase As a Locus of Flexibility in a Mitogen-Activated Protein Kinase Signaling Network

Upinder S. Bhalla,1*dagger Prahlad T. Ram,2*dagger Ravi Iyengar2

Intracellular signaling networks receive and process information to control cellular machines. The mitogen-activated protein kinase (MAPK) 1,2/protein kinase C (PKC) system is one such network that regulates many cellular machines, including the cell cycle machinery and autocrine/paracrine factor synthesizing machinery. We used a combination of computational analysis and experiments in mouse NIH-3T3 fibroblasts to understand the design principles of this controller network. We find that the growth factor-stimulated signaling network containing MAPK 1, 2/PKC can operate with one (monostable) or two (bistable) stable states. At low concentrations of MAPK phosphatase, the system exhibits bistable behavior, such that brief stimulus results in sustained MAPK activation. The MAPK-induced increase in the amounts of MAPK phosphatase eliminates the prolonged response capability and moves the network to a monostable state, in which it behaves as a proportional response system responding acutely to stimulus. Thus, the MAPK 1, 2/PKC controller network is flexibly designed, and MAPK phosphatase may be critical for this flexible response.

1 National Center for Biological Sciences, Bangalore 560065 India.
2 Department of Pharmacology and Biological Chemistry, Mount Sinai School of Medicine, New York, NY 10029, USA.
*   These authors contributed equally to this work.

dagger    Queries regarding computational analysis should be addressed to U.S.B. (e-mail: bhalla{at}ncbs.res.in) and experimental work to P.T.R. (e-mail: prahlad.ram{at}mssm.edu



THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
A High-throughput Assay for Phosphoprotein-specific Phosphatase Activity in Cellular Extracts.
A. K. Bose and K. A. Janes (2013)
Mol. Cell. Proteomics 12, 797-806
   Abstract »    Full Text »    PDF »
A coherent feedforward loop design principle to sustain robustness of biological networks.
D.-H. Le and Y.-K. Kwon (2013)
Bioinformatics 29, 630-637
   Abstract »    Full Text »    PDF »
Bottom-up construction of in vitro switchable memories.
A. Padirac, T. Fujii, and Y. Rondelez (2012)
PNAS 109, E3212-E3220
   Abstract »    Full Text »    PDF »
Anti-inflammatory Effects of Mapracorat, a Novel Selective Glucocorticoid Receptor Agonist, Is Partially Mediated by MAP Kinase Phosphatase-1 (MKP-1).
T. R. Vollmer, A. Stockhausen, and J.-Z. Zhang (2012)
J. Biol. Chem. 287, 35212-35221
   Abstract »    Full Text »    PDF »
Long-term model predictive control of gene expression at the population and single-cell levels.
J. Uhlendorf, A. Miermont, T. Delaveau, G. Charvin, F. Fages, S. Bottani, G. Batt, and P. Hersen (2012)
PNAS 109, 14271-14276
   Abstract »    Full Text »    PDF »
Plasticity of Recurrent Inhibition in the Drosophila Antennal Lobe.
I. P. Sudhakaran, E. E. Holohan, S. Osman, V. Rodrigues, K. VijayRaghavan, and M. Ramaswami (2012)
J. Neurosci. 32, 7225-7231
   Abstract »    Full Text »    PDF »
Negative Feedback and Adaptive Resistance to the Targeted Therapy of Cancer.
S. Chandarlapaty (2012)
Cancer Discovery 2, 311-319
   Abstract »    Full Text »    PDF »
Merging Systems Biology with Pharmacodynamics.
R. Iyengar, S. Zhao, S.-W. Chung, D. E. Mager, and J. M. Gallo (2012)
Science Translational Medicine 4, 126ps7
   Full Text »    PDF »
Systems glycobiology: biochemical reaction networks regulating glycan structure and function.
S. Neelamegham and G. Liu (2011)
Glycobiology 21, 1541-1553
   Abstract »    Full Text »    PDF »
Bistability in Biochemical Signaling Models.
E. A. Sobie (2011)
Science Signaling 4, tr10
   Abstract »    Full Text »    PDF »
Obtaining and Estimating Kinetic Parameters from the Literature.
S. R. Neves (2011)
Science Signaling 4, tr8
   Abstract »    Full Text »    PDF »
The effects of feedback loops on disease comorbidity in human signaling networks.
D.-H. Le and Y.-K. Kwon (2011)
Bioinformatics 27, 1113-1120
   Abstract »    Full Text »    PDF »
Systematic Quantification of Negative Feedback Mechanisms in the Extracellular Signal-regulated Kinase (ERK) Signaling Network.
M. Cirit, C.-C. Wang, and J. M. Haugh (2010)
J. Biol. Chem. 285, 36736-36744
   Abstract »    Full Text »    PDF »
Modulation of Gonadotropin-Releasing Hormone-Induced Extracellular Signal-Regulated Kinase Activation by Dual-Specificity Protein Phosphatase 1 in L{beta}T2 Gonadotropes.
K. A. Nguyen, R. E. Intriago, H. C. Upadhyay, S. J. Santos, N. J. G. Webster, and M. A. Lawson (2010)
Endocrinology 151, 4882-4893
   Abstract »    Full Text »    PDF »
Neuregulin 1 Sustains the Gene Regulatory Network in Both Trabecular and Nontrabecular Myocardium.
D. Lai, X. Liu, A. Forrai, O. Wolstein, J. Michalicek, I. Ahmed, A. N. Garratt, C. Birchmeier, M. Zhou, L. Hartley, et al. (2010)
Circ. Res. 107, 715-727
   Abstract »    Full Text »    PDF »
Identification of Optimal Drug Combinations Targeting Cellular Networks: Integrating Phospho-Proteomics and Computational Network Analysis.
S. Iadevaia, Y. Lu, F. C. Morales, G. B. Mills, and P. T. Ram (2010)
Cancer Res. 70, 6704-6714
   Abstract »    Full Text »    PDF »
Mitogen-Activated Protein Kinase Phosphatase 2 Regulates the Inflammatory Response in Sepsis.
T. T. Cornell, P. Rodenhouse, Q. Cai, L. Sun, and T. P. Shanley (2010)
Infect. Immun. 78, 2868-2876
   Abstract »    Full Text »    PDF »
Integration of a Phosphatase Cascade with the Mitogen-activated Protein Kinase Pathway Provides for a Novel Signal Processing Function.
V. K. Chaudhri, D. Kumar, M. Misra, R. Dua, and K. V. S. Rao (2010)
J. Biol. Chem. 285, 1296-1310
   Abstract »    Full Text »    PDF »
Inhibiting JNK Dephosphorylation and Induction of Apoptosis by Novel Anticancer Agent NSC-741909 in Cancer Cells.
X. Wei, W. Guo, S. Wu, L. Wang, Y. Lu, B. Xu, J. Liu, and B. Fang (2009)
J. Biol. Chem. 284, 16948-16955
   Abstract »    Full Text »    PDF »
Mitogen-Activated Protein Kinase Phosphatase-1 in Human Breast Cancer Independently Predicts Prognosis and Is Repressed by Doxorubicin.
F. Rojo, I. Gonzalez-Navarrete, R. Bragado, A. Dalmases, S. Menendez, M. Cortes-Sempere, C. Suarez, C. Oliva, S. Servitja, V. Rodriguez-Fanjul, et al. (2009)
Clin. Cancer Res. 15, 3530-3539
   Abstract »    Full Text »    PDF »
Antitumor Efficacy of the Novel RAF Inhibitor GDC-0879 Is Predicted by BRAFV600E Mutational Status and Sustained Extracellular Signal-Regulated Kinase/Mitogen-Activated Protein Kinase Pathway Suppression.
K. P. Hoeflich, S. Herter, J. Tien, L. Wong, L. Berry, J. Chan, C. O'Brien, Z. Modrusan, S. Seshagiri, M. Lackner, et al. (2009)
Cancer Res. 69, 3042-3051
   Abstract »    Full Text »    PDF »
A Systems Perspective of Ras Signaling in Cancer.
E. C. Stites and K. S. Ravichandran (2009)
Clin. Cancer Res. 15, 1510-1513
   Abstract »    Full Text »    PDF »
Lab-on-a-chip technologies for proteomic analysis from isolated cells.
H Sedgwick, F Caron, P.B Monaghan, W Kolch, and J.M Cooper (2008)
J R Soc Interface 5, S123-S130
   Abstract »    Full Text »    PDF »
Retinoic Acid Utilizes CREB and USF1 in a Transcriptional Feed-Forward Loop in Order To Stimulate MKP1 Expression in Human Immunodeficiency Virus-Infected Podocytes.
T.-C. Lu, Z. Wang, X. Feng, P. Chuang, W. Fang, Y. Chen, S. Neves, A. Maayan, H. Xiong, Y. Liu, et al. (2008)
Mol. Cell. Biol. 28, 5785-5794
   Abstract »    Full Text »    PDF »
Coherent coupling of feedback loops: a design principle of cell signaling networks.
Y.-K. Kwon and K.-H. Cho (2008)
Bioinformatics 24, 1926-1932
   Abstract »    Full Text »    PDF »
Quantitative approaches to the study of bistability in the lac operon of Escherichia coli.
M. Santillan and M. C Mackey (2008)
J R Soc Interface 5, S29-S39
   Abstract »    Full Text »    PDF »
Genetic Complementation Screen Identifies a Mitogen-activated Protein Kinase Phosphatase, MKP3, as a Regulator of Dopamine Transporter Trafficking.
O. V. Mortensen, M. B. Larsen, B. M. Prasad, and S. G. Amara (2008)
Mol. Biol. Cell 19, 2818-2829
   Abstract »    Full Text »    PDF »
Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth.
K. D. Bromberg, A. Ma'ayan, S. R. Neves, and R. Iyengar (2008)
Science 320, 903-909
   Abstract »    Full Text »    PDF »
Network topology determines dynamics of the mammalian MAPK1,2 signaling network: bifan motif regulation of C-Raf and B-Raf isoforms by FGFR and MC1R.
M. Muller, M. Obeyesekere, G. B. Mills, and P. T. Ram (2008)
FASEB J 22, 1393-1403
   Abstract »    Full Text »    PDF »
Quantitative Models of Mammalian Cell Signaling Pathways.
R. Iyengar (2008)
Science Signaling 1, tr1
   Abstract »    Full Text »    PDF »
{beta}2-Adrenergic Receptor Signaling and Desensitization Elucidated by Quantitative Modeling of Real Time cAMP Dynamics.
J. D. Violin, L. M. DiPilato, N. Yildirim, T. C. Elston, J. Zhang, and R. J. Lefkowitz (2008)
J. Biol. Chem. 283, 2949-2961
   Abstract »    Full Text »    PDF »
Bistable MAP kinase activity: a plausible mechanism contributing to maintenance of late long-term potentiation.
P. Smolen, D. A. Baxter, and J. H. Byrne (2008)
Am J Physiol Cell Physiol 294, C503-C515
   Abstract »    Full Text »    PDF »
Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities.
M. N. Artyomov, J. Das, M. Kardar, and A. K. Chakraborty (2007)
PNAS 104, 18958-18963
   Abstract »    Full Text »    PDF »
BCR-Tyrosine 177 Plays an Essential Role in Ras and Akt Activation and in Human Hematopoietic Progenitor Transformation in Chronic Myelogenous Leukemia.
S. Chu, L. Li, H. Singh, and R. Bhatia (2007)
Cancer Res. 67, 7045-7053
   Abstract »    Full Text »    PDF »
Reversal of Synaptic Memory by Ca2+/Calmodulin-Dependent Protein Kinase II Inhibitor.
M. Sanhueza, C. C. McIntyre, and J. E. Lisman (2007)
J. Neurosci. 27, 5190-5199
   Abstract »    Full Text »    PDF »
Pulse Sensitivity of the Luteinizing Hormone {beta} Promoter Is Determined by a Negative Feedback Loop Involving Early Growth Response-1 and Ngfi-A Binding Protein 1 and 2.
M. A. Lawson, R. Tsutsumi, H. Zhang, I. Talukdar, B. K. Butler, S. J. Santos, P. L. Mellon, and N. J. G. Webster (2007)
Mol. Endocrinol. 21, 1175-1191
   Abstract »    Full Text »    PDF »
Light-Inducible and Clock-Controlled Expression of MAP Kinase Phosphatase 1 in Mouse Central Pacemaker Neurons.
M. Doi, S. Cho, I. Yujnovsky, J. Hirayama, N. Cermakian, A. C. B. Cato, and P. Sassone-Corsi (2007)
J Biol Rhythms 22, 127-139
   Abstract »    PDF »
Temporal analysis of E2 transcriptional induction of PTP and MKP and downregulation of IGF-I pathway key components in the mouse uterus.
M. Ivanga, Y. Labrie, E. Calvo, P. Belleau, C. Martel, V. Luu-The, J. Morissette, F. Labrie, and F. Durocher (2007)
Physiol Genomics 29, 13-23
   Abstract »    Full Text »    PDF »
In vitro and in vivo synergy of MCP compounds with mitogen-activated protein kinase pathway- and microtubule-targeting inhibitors.
N. Skobeleva, S. Menon, L. Weber, E. A. Golemis, and V. Khazak (2007)
Mol. Cancer Ther. 6, 898-906
   Abstract »    Full Text »    PDF »
Bisindolylmaleimide I Suppresses Fibroblast Growth Factor-mediated Activation of Erk MAP Kinase in Chondrocytes by Preventing Shp2 Association with the Frs2 and Gab1 Adaptor Proteins.
P. Krejci, B. Masri, L. Salazar, C. Farrington-Rock, H. Prats, L. M. Thompson, and W. R. Wilcox (2007)
J. Biol. Chem. 282, 2929-2936
   Abstract »    Full Text »    PDF »
Dynamic regulation of ERK2 nuclear translocation and mobility in living cells.
M. Costa, M. Marchi, F. Cardarelli, A. Roy, F. Beltram, L. Maffei, and G. M. Ratto (2006)
J. Cell Sci. 119, 4952-4963
   Abstract »    Full Text »    PDF »
Autogenous and nonautogenous control of response in a genetic network.
F. M. Camas, J. Blazquez, and J. F. Poyatos (2006)
PNAS 103, 12718-12723
   Abstract »    Full Text »    PDF »
Synaptic plasticity in vitro and in silico: insights into an intracellular signaling maze..
S. M. Ajay and U. S. Bhalla (2006)
Physiology 21, 289-296
   Abstract »    Full Text »    PDF »
A Novel Mechanism of FSH Regulation of DNA Synthesis in the Granulosa Cells of Hamster Preantral Follicles: Involvement of a Protein Kinase C-Mediated MAP Kinase 3/1 Self-Activation Loop.
P. Yang and S. K. Roy (2006)
Biol Reprod 75, 149-157
   Abstract »    Full Text »    PDF »
Constructing quantitative models from qualitative mutant phenotypes: preferences in selecting sensory organ precursors.
C.-P. Hsu, P.-H. Lee, C.-W. Chang, and C.-T. Lee (2006)
Bioinformatics 22, 1375-1382
   Abstract »    Full Text »    PDF »
Dynamics of the Ras/ERK MAPK Cascade as Monitored by Fluorescent Probes.
A. Fujioka, K. Terai, R. E. Itoh, K. Aoki, T. Nakamura, S. Kuroda, E. Nishida, and M. Matsuda (2006)
J. Biol. Chem. 281, 8917-8926
   Abstract »    Full Text »    PDF »
Transient I{kappa}B Kinase Activity Mediates Temporal NF-{kappa}B Dynamics in Response to a Wide Range of Tumor Necrosis Factor-{alpha} Doses.
R. Cheong, A. Bergmann, S. L. Werner, J. Regal, A. Hoffmann, and A. Levchenko (2006)
J. Biol. Chem. 281, 2945-2950
   Abstract »    Full Text »    PDF »
Pheromone-regulated Sumoylation of Transcription Factors That Mediate the Invasive to Mating Developmental Switch in Yeast.
Y. Wang and H. G. Dohlman (2006)
J. Biol. Chem. 281, 1964-1969
   Abstract »    Full Text »    PDF »
Dose-Incidence Modeling: Consequences of Linking Quantal Measures of Response to Depletion of Critical Tissue Targets.
M. E. Andersen, R. W. Lutz, K. H. Liao, and W. K. Lutz (2006)
Toxicol. Sci. 89, 331-337
   Abstract »    Full Text »    PDF »
Quantitative elucidation of a distinct spatial gradient-sensing mechanism in fibroblasts.
I. C. Schneider and J. M. Haugh (2005)
J. Cell Biol. 171, 883-892
   Abstract »    Full Text »    PDF »
Short-Term Exposure of Renal Proximal Tubules to Gentamicin Increases Long-Term Multidrug Resistance Protein 2 (Abcc2) Transport Function and Reduces Nephrotoxicant Sensitivity.
S. Notenboom, D. S. Miller, L. H. Kuik, P. Smits, F. G. M. Russel, and R. Masereeuw (2005)
J. Pharmacol. Exp. Ther. 315, 912-920
   Abstract »    Full Text »    PDF »
Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions.
O. Brandman, J. E. Ferrell Jr., R. Li, and T. Meyer (2005)
Science 310, 496-498
   Abstract »    Full Text »    PDF »
Psychostimulants, L-type Calcium Channels, Kinases, and Phosphatases.
A. M. Rajadhyaksha and B. E. Kosofsky (2005)
Neuroscientist 11, 494-502
   Abstract »    PDF »
Formation of Regulatory Patterns During Signal Propagation in a Mammalian Cellular Network.
A. Ma'ayan, S. L. Jenkins, S. Neves, A. Hasseldine, E. Grace, B. Dubin-Thaler, N. J. Eungdamrong, G. Weng, P. T. Ram, J. J. Rice, et al. (2005)
Science 309, 1078-1083
   Abstract »    Full Text »    PDF »
Prostaglandin E2 Activates Mitogen-Activated Protein Kinase/Erk Pathway Signaling and Cell Proliferation in Non-Small Cell Lung Cancer Cells in an Epidermal Growth Factor Receptor-Independent Manner.
K. Krysan, K. L. Reckamp, H. Dalwadi, S. Sharma, E. Rozengurt, M. Dohadwala, and S. M. Dubinett (2005)
Cancer Res. 65, 6275-6281
   Abstract »    Full Text »    PDF »
The duration, magnitude and compartmentalization of ERK MAP kinase activity: mechanisms for providing signaling specificity.
M. Ebisuya, K. Kondoh, and E. Nishida (2005)
J. Cell Sci. 118, 2997-3002
   Abstract »    Full Text »    PDF »
Expression profiling reveals functionally important genes and coordinately regulated signaling pathway genes during in vitro angiogenesis.
C. N. Hahn, Z. J. Su, C. J. Drogemuller, A. Tsykin, S. R. Waterman, P. J. Brautigan, S. Yu, G. Kremmidiotis, A. Gardner, P. J. Solomon, et al. (2005)
Physiol Genomics 22, 57-69
   Abstract »    Full Text »    PDF »
Dynamic Characteristics of Transient Responses.
Y.-i. Ozaki, S. Sasagawa, and S. Kuroda (2005)
J. Biochem. 137, 659-663
   Abstract »    Full Text »    PDF »
A coherent framework for multiresolution analysis of biological networks with "memory": Ras pathway, cell cycle, and immune system.
P. E. Barbano, M. Spivak, J. Feng, M. Antoniotti, and B. Mishra (2005)
PNAS 102, 6245-6250
   Abstract »    Full Text »    PDF »
Cannabinoid Receptor-induced Neurite Outgrowth Is Mediated by Rap1 Activation through G{alpha}o/i-triggered Proteasomal Degradation of Rap1GAPII.
J. D. Jordan, J. C. He, N. J. Eungdamrong, I. Gomes, W. Ali, T. Nguyen, T. G. Bivona, M. R. Philips, L. A. Devi, and R. Iyengar (2005)
J. Biol. Chem. 280, 11413-11421
   Abstract »    Full Text »    PDF »
Reversible Oxidation of ERK-directed Protein Phosphatases Drives Oxidative Toxicity in Neurons.
D. J. Levinthal and D. B. DeFranco (2005)
J. Biol. Chem. 280, 5875-5883
   Abstract »    Full Text »    PDF »
Introduction: Overview of Pathways and Networks and GPCR Signaling.
R. Iyengar (2005)
Sci. STKE 2005, tr4
   Abstract »    Full Text »    PDF »
Homocysteine thiolactone inhibits insulin-stimulated DNA and protein synthesis: possible role of mitogen-activated protein kinase (MAPK), glycogen synthase kinase-3 (GSK-3) and p70 S6K phosphorylation.
S Najib and V Sanchez-Margalet (2005)
J. Mol. Endocrinol. 34, 119-126
   Abstract »    Full Text »    PDF »
DARPP-32: A molecular switch at the nexus of reward pathway plasticity.
T. D. Gould and H. K. Manji (2005)
PNAS 102, 253-254
   Full Text »    PDF »
Epidermal Growth Factor-stimulated Intestinal Epithelial Cell Migration Requires Src Family Kinase-dependent p38 MAPK Signaling.
M. R. Frey, A. Golovin, and D. B. Polk (2004)
J. Biol. Chem. 279, 44513-44521
   Abstract »    Full Text »    PDF »
Mechanisms Regulating the Constitutive Activation of the Extracellular Signal-Regulated Kinase (ERK) Signaling Pathway in Ovarian Cancer and the Effect of Ribonucleic Acid Interference for ERK1/2 on Cancer Cell Proliferation.
R. Steinmetz, H. A. Wagoner, P. Zeng, J. R. Hammond, T. S. Hannon, J. L. Meyers, and O. H. Pescovitz (2004)
Mol. Endocrinol. 18, 2570-2582
   Abstract »    Full Text »    PDF »
Both Nuclear-Cytoplasmic Shuttling of the Dual Specificity Phosphatase MKP-3 and Its Ability to Anchor MAP Kinase in the Cytoplasm Are Mediated by a Conserved Nuclear Export Signal.
M. Karlsson, J. Mathers, R. J. Dickinson, M. Mandl, and S. M. Keyse (2004)
J. Biol. Chem. 279, 41882-41891
   Abstract »    Full Text »    PDF »
Robustness properties of circadian clock architectures.
J. Stelling, E. D. Gilles, and F. J. Doyle III (2004)
PNAS 101, 13210-13215
   Abstract »    Full Text »    PDF »
L-Type Ca2+ Channels Mediate Adaptation of Extracellular Signal-Regulated Kinase 1/2 Phosphorylation in the Ventral Tegmental Area after Chronic Amphetamine Treatment.
A. Rajadhyaksha, I. Husson, S. S. Satpute, K. D. Kuppenbender, J. Q. Ren, R. M. Guerriero, D. G. Standaert, and B. E. Kosofsky (2004)
J. Neurosci. 24, 7464-7476
   Abstract »    Full Text »    PDF »
Prolonged Extracellular Signal-Regulated Kinase 1/2 Activation during Fibroblast Growth Factor 1- or Heregulin {beta}1-Induced Antiestrogen-Resistant Growth of Breast Cancer Cells Is Resistant to Mitogen-Activated Protein/Extracellular Regulated Kinase Kinase Inhibitors.
J. V. Thottassery, Y. Sun, L. Westbrook, S. S. Rentz, M. Manuvakhova, Z. Qu, S. Samuel, R. Upshaw, A. Cunningham, and F. G. Kern (2004)
Cancer Res. 64, 4637-4647
   Abstract »    Full Text »    PDF »
A Semidominant Mutation in an Arabidopsis Mitogen-Activated Protein Kinase Phosphatase-Like Gene Compromises Cortical Microtubule Organization.
K. Naoi and T. Hashimoto (2004)
PLANT CELL 16, 1841-1853
   Abstract »    Full Text »    PDF »
Cutting Edge: Extracellular Signal-Regulated Kinases 1/2 Function as Integrators of TCR Signal Strength.
A. E. Schade and A. D. Levine (2004)
J. Immunol. 172, 5828-5832
   Abstract »    Full Text »    PDF »
Oxidation of Protein Tyrosine Phosphatases as a Pharmaceutical Mechanism of Action: A Study Using 4-Hydroxy-3,3-dimethyl-2H-benzo[g]indole-2,5(3H)-dione.
C. Liljebris, P. Baranczewski, E. Bjorkstrand, S. Bystrom, B. Lundgren, A. Tjernberg, M. Warolen, and S. R. James (2004)
J. Pharmacol. Exp. Ther. 309, 711-719
   Abstract »    Full Text »    PDF »
Induction of CYP1A1 in Primary Rat Hepatocytes by 3,3',4,4',5-Pentachlorobiphenyl: Evidence for a Switch Circuit Element.
C. T. French, W. H. Hanneman, L. S. Chubb, R. E. Billings, and M. E. Andersen (2004)
Toxicol. Sci. 78, 276-286
   Abstract »    Full Text »    PDF »
PaASK1, a Mitogen-Activated Protein Kinase Kinase Kinase That Controls Cell Degeneration and Cell Differentiation in Podospora anserina.
S. Kicka and P. Silar (2004)
Genetics 166, 1241-1252
   Abstract »    Full Text »    PDF »
Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.
D. Angeli, J. E. Ferrell Jr., and E. D. Sontag (2004)
PNAS 101, 1822-1827
   Abstract »    Full Text »    PDF »
Developing Complex Signaling Models Using GENESIS/Kinetikit.
S. J. Vayttaden and U. S. Bhalla (2004)
Sci. STKE 2004, pl4
   Abstract »    Full Text »    PDF »
Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.
N. I. Markevich, J. B. Hoek, and B. N. Kholodenko (2004)
J. Cell Biol. 164, 353-359
   Abstract »    Full Text »    PDF »
Somatic activation of oncogenic Kras in hematopoietic cells initiates a rapidly fatal myeloproliferative disorder.
B. S. Braun, D. A. Tuveson, N. Kong, D. T. Le, S. C. Kogan, J. Rozmus, M. M. Le Beau, T. E. Jacks, and K. M. Shannon (2004)
PNAS 101, 597-602
   Abstract »    Full Text »    PDF »
Simulation Methods for Optimal Experimental Design in Systems Biology.
D. Faller, U. Klingmuller, and J. Timmer (2003)
SIMULATION 79, 717-725
   Abstract »    PDF »
{micro} Opioid Transactivation and Down-Regulation of the Epidermal Growth Factor Receptor in Astrocytes: Implications for Mitogen-Activated Protein Kinase Signaling.
M. M. Belcheva, Y. Tan, V. M. Heaton, A. L. Clark, and C. J. Coscia (2003)
Mol. Pharmacol. 64, 1391-1401
   Abstract »    Full Text »    PDF »
A Growth Regulatory Loop That Provides Homeostasis to Phytochrome A Signaling.
P. Lariguet, H. E. Boccalandro, J. M. Alonso, J. R. Ecker, J. Chory, J. J. Casal, and C. Fankhauser (2003)
PLANT CELL 15, 2966-2978
   Abstract »    Full Text »    PDF »
Regulators of G Protein Signaling and Transient Activation of Signaling: EXPERIMENTAL AND COMPUTATIONAL ANALYSIS REVEALS NEGATIVE AND POSITIVE FEEDBACK CONTROLS ON G PROTEIN ACTIVITY.
N. Hao, N. Yildirim, Y. Wang, T. C. Elston, and H. G. Dohlman (2003)
J. Biol. Chem. 278, 46506-46515
   Abstract »    Full Text »    PDF »
Histone Deacetylase Inhibition by Sodium Butyrate Chemotherapy Ameliorates the Neurodegenerative Phenotype in Huntington's Disease Mice.
R. J. Ferrante, J. K. Kubilus, J. Lee, H. Ryu, A. Beesen, B. Zucker, K. Smith, N. W. Kowall, R. R. Ratan, R. Luthi-Carter, et al. (2003)
J. Neurosci. 23, 9418-9427
   Abstract »    Full Text »    PDF »
The Strength of Persistent Antigenic Stimulation Modulates Adaptive Tolerance in Peripheral CD4+ T Cells.
N. J. Singh and R. H. Schwartz (2003)
J. Exp. Med. 198, 1107-1117
   Abstract »    Full Text »    PDF »
Acute application of TNF stimulates apical 70-pS K+ channels in the thick ascending limb of rat kidney.
Y. Wei, E. Babilonia, P. L. Pedraza, N. R. Ferreri, and W.-H. Wang (2003)
Am J Physiol Renal Physiol 285, F491-F497
   Abstract »    Full Text »    PDF »
Acute Induction of Conserved Synaptic Signaling Pathways in Drosophila Melanogaster.
C. A. Hoeffer, S. Sanyal, and M. Ramaswami (2003)
J. Neurosci. 23, 6362-6372
   Abstract »    Full Text »    PDF »
Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors.
B. N Kholodenko (2003)
J. Exp. Biol. 206, 2073-2082
   Abstract »    Full Text »    PDF »
Loss of HSulf-1 Up-regulates Heparin-binding Growth Factor Signaling in Cancer.
J. Lai, J. Chien, J. Staub, R. Avula, E. L. Greene, T. A. Matthews, D. I. Smith, S. H. Kaufmann, L. R. Roberts**, and V. Shridhar** (2003)
J. Biol. Chem. 278, 23107-23117
   Abstract »    Full Text »    PDF »
Endogenous versus exogenous glucocorticoid responses to experimental bacterial sepsis.
R. Silverstein and D. C. Johnson (2003)
J. Leukoc. Biol. 73, 417-427
   Abstract »    Full Text »    PDF »
The Bio-Logic and machinery of plant morphogenesis.
K. J. Niklas (2003)
Am. J. Botany 90, 515-525
   Abstract »    Full Text »    PDF »
Nicotiana benthamiana gp91phox Homologs NbrbohA and NbrbohB Participate in H2O2 Accumulation and Resistance to Phytophthora infestans.
H. Yoshioka, N. Numata, K. Nakajima, S. Katou, K. Kawakita, O. Rowland, J. D. G. Jones, and N. Doke (2003)
PLANT CELL 15, 706-718
   Abstract »    Full Text »    PDF »
Identification of nucleocytoplasmic cycling as a remote sensor in cellular signaling by databased modeling.
I. Swameye, T. G. Muller, J. Timmer, O. Sandra, and U. Klingmuller (2003)
PNAS 100, 1028-1033
   Abstract »    Full Text »    PDF »
SIGNAL TRANSDUCTION: History Matters.
N. T. Ingolia and A. W. Murray (2002)
Science 297, 948-949
   Full Text »    PDF »

To Advertise     Find Products


Science Signaling. ISSN 1937-9145 (online), 1945-0877 (print). Pre-2008: Science's STKE. ISSN 1525-8882