Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
BRCT Repeats As Phosphopeptide-Binding Modules Involved in Protein Targeting
Isaac A. Manke,
Drew M. Lowery,*
Anhco Nguyen,*
Michael B. Yaffe
Abstract:
We used a proteomic approach to identify phosphopeptide-bindingmodules mediating signal transduction events in the DNA damageresponse pathway. Using a library of partially degenerate phosphopeptides,we identified tandem BRCT (BRCA1 carboxyl-terminal) domainsin PTIP (Pax transactivation domain-interacting protein) andin BRCA1 as phosphoserine- or phosphothreonine-specific bindingmodules that recognize substrates phosphorylated by the kinasesATM (ataxia telangiectasiamutated) and ATR(ataxia telangiectasiaand RAD3-related) in response to -irradiation. PTIP tandem BRCTdomains are responsible for phosphorylation-dependent proteinlocalization into 53BP1- and phospho-H2AX (-H2AX)containingnuclear foci, a marker of DNA damage. These findings providea molecular basis for BRCT domain function in the DNA damageresponse and may help to explain why the BRCA1 BRCT domain mutationMet1775 Arg, which fails to bind phosphopeptides, predisposeswomen to breast and ovarian cancer.
Center for Cancer Research, Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Quantitative Dissection and Stoichiometry Determination of the Human SET1/MLL Histone Methyltransferase Complexes.
R. van Nuland, A. H. Smits, P. Pallaki, P. W. T. C. Jansen, M. Vermeulen, and H. T. M. Timmers (2013)
Mol. Cell. Biol.
33, 2067-2077
|Abstract »|Full Text »|PDF »
Rif1 Prevents Resection of DNA Breaks and Promotes Immunoglobulin Class Switching.
M. Di Virgilio, E. Callen, A. Yamane, W. Zhang, M. Jankovic, A. D. Gitlin, N. Feldhahn, W. Resch, T. Y. Oliveira, B. T. Chait, et al. (2013)
Science
339, 711-715
|Abstract »|Full Text »|PDF »
DNA-binding determinants promoting NHEJ by human Pol{micro}.
M. J. Martin, R. Juarez, and L. Blanco (2012)
Nucleic Acids Res.
40, 11389-11403
|Abstract »|Full Text »|PDF »
A Dual Interaction between the DNA Damage Response Protein MDC1 and the RAG1 Subunit of the V(D)J Recombinase.
G. Coster, A. Gold, D. Chen, D. G. Schatz, and M. Goldberg (2012)
J. Biol. Chem.
287, 36488-36498
|Abstract »|Full Text »|PDF »
A polyglutamine expansion disease protein sequesters PTIP to attenuate DNA repair and increase genomic instability.
H. Xiao, Z. Yu, Y. Wu, J. Nan, D. E. Merry, J. M. Sekiguchi, D. O. Ferguson, A. P. Lieberman, and G. R. Dressler (2012)
Hum. Mol. Genet.
21, 4225-4236
|Abstract »|Full Text »|PDF »
Charting the Landscape of Tandem BRCT Domain-Mediated Protein Interactions.
N. T. Woods, R. D. Mesquita, M. Sweet, M. A. Carvalho, X. Li, Y. Liu, H. Nguyen, C. E. Thomas, E. S. Iversen Jr., S. Marsillac, et al. (2012)
Science Signaling
5, rs6
|Abstract »|Full Text »|PDF »
Dual recognition of phosphoserine and phosphotyrosine in histone variant H2A.X by DNA damage response protein MCPH1.
N. Singh, H. Basnet, T. D. Wiltshire, D. H. Mohammad, J. R. Thompson, A. Heroux, M. V. Botuyan, M. B. Yaffe, F. J. Couch, M. G. Rosenfeld, et al. (2012)
PNAS
109, 14381-14386
|Abstract »|Full Text »|PDF »
Structure of C-terminal Tandem BRCT Repeats of Rtt107 Protein Reveals Critical Role in Interaction with Phosphorylated Histone H2A during DNA Damage Repair.
X. Li, K. Liu, F. Li, J. Wang, H. Huang, J. Wu, and Y. Shi (2012)
J. Biol. Chem.
287, 9137-9146
|Abstract »|Full Text »|PDF »
Characterization of BRCA1 Protein Targeting, Dynamics, and Function at the Centrosome: A ROLE FOR THE NUCLEAR EXPORT SIGNAL, CRM1, AND AURORA A KINASE.
Chromodomain Helicase DNA-binding Protein 4 (CHD4) Regulates Homologous Recombination DNA Repair, and Its Deficiency Sensitizes Cells to Poly(ADP-ribose) Polymerase (PARP) Inhibitor Treatment.
M.-R. Pan, H.-J. Hsieh, H. Dai, W.-C. Hung, K. Li, G. Peng, and S.-Y. Lin (2012)
J. Biol. Chem.
287, 6764-6772
|Abstract »|Full Text »|PDF »
Breast Cancer-Associated Abraxas Mutation Disrupts Nuclear Localization and DNA Damage Response Functions.
S. Solyom, B. Aressy, K. Pylkas, J. Patterson-Fortin, J. M. Hartikainen, A. Kallioniemi, S. Kauppila, J. Nikkila, V.-M. Kosma, A. Mannermaa, et al. (2012)
Science Translational Medicine
4, 122ra23
|Abstract »|Full Text »|PDF »
Molecular Basis for the Association of Microcephalin (MCPH1) Protein with the Cell Division Cycle Protein 27 (Cdc27) Subunit of the Anaphase-promoting Complex.
N. Singh, T. D. Wiltshire, J. R. Thompson, G. Mer, and F. J. Couch (2012)
J. Biol. Chem.
287, 2854-2862
|Abstract »|Full Text »|PDF »
R. D. Mesquita, N. T. Woods, E. S. Seabra-Junior, and A. N. A. Monteiro (2010)
Genes & Cancer
1, 1140-1146
|Abstract »|Full Text »|PDF »
Oncogenes and Tumor Suppressor Genes.
E. Y. H. P. Lee and W. J. Muller (2010)
Cold Spring Harb Perspect Biol
2, a003236
|Abstract »|Full Text »|PDF »
PTIP Promotes Chromatin Changes Critical for Immunoglobulin Class Switch Recombination.
J. A. Daniel, M. A. Santos, Z. Wang, C. Zang, K. R. Schwab, M. Jankovic, D. Filsuf, H.-T. Chen, A. Gazumyan, A. Yamane, et al. (2010)
Science
329, 917-923
|Abstract »|Full Text »|PDF »
How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells?.
Structure of the DNA-bound BRCA1 C-terminal Region from Human Replication Factor C p140 and Model of the Protein-DNA Complex.
M. Kobayashi, E. AB, A. M. J. J. Bonvin, and G. Siegal (2010)
J. Biol. Chem.
285, 10087-10097
|Abstract »|Full Text »|PDF »
Functional Interaction between Epstein-Barr Virus Replication Protein Zta and Host DNA Damage Response Protein 53BP1.
S. G. Bailey, E. Verrall, C. Schelcher, A. Rhie, A. J. Doherty, and A. J. Sinclair (2009)
J. Virol.
83, 11116-11122
|Abstract »|Full Text »|PDF »
Multimodal Assessment of Protein Functional Deficiency Supports Pathogenicity of BRCA1 p.V1688del.
A. De Nicolo, E. Parisini, Q. Zhong, M. Dalla Palma, K. A. Stoeckert, S. M. Domchek, K. L. Nathanson, M. A. Caligo, M. Vidal, M. E. Cusick, et al. (2009)
Cancer Res.
69, 7030-7037
|Abstract »|Full Text »|PDF »
Using RNA Interference to Identify Specific Modifiers of a Temperature-Sensitive, Embryonic-Lethal Mutation in the Caenorhabditis elegans Ubiquitin-Like Nedd8 Protein Modification Pathway E1-Activating Gene rfl-1.
M. Dorfman, J.-E. Gomes, S. O'Rourke, and B. Bowerman (2009)
Genetics
182, 1035-1049
|Abstract »|Full Text »|PDF »
PTIP Regulates 53BP1 and SMC1 at the DNA Damage Sites.
J. Wu, M. J. Prindle, G. R. Dressler, and X. Yu (2009)
J. Biol. Chem.
284, 18078-18084
|Abstract »|Full Text »|PDF »
Drosophila ptip is essential for anterior/posterior patterning in development and interacts with the PcG and trxG pathways.
M. Fang, H. Ren, J. Liu, K. M. Cadigan, S. R. Patel, and G. R. Dressler (2009)
Development
136, 1929-1938
|Abstract »|Full Text »|PDF »
MERIT40 facilitates BRCA1 localization and DNA damage repair.
Accumulation of Pax2 Transactivation Domain Interaction Protein (PTIP) at Sites of DNA Breaks via RNF8-dependent Pathway Is Required for Cell Survival after DNA Damage.
Z. Gong, Y.-W. Cho, J.-E. Kim, K. Ge, and J. Chen (2009)
J. Biol. Chem.
284, 7284-7293
|Abstract »|Full Text »|PDF »
Somatic hypermutation of immunoglobulin genes: lessons from proliferating cell nuclear antigenK164R mutant mice.
P. Langerak, P. H.L Krijger, M. R Heideman, P. C.M van den Berk, and H. Jacobs (2009)
Phil Trans R Soc B
364, 621-629
|Abstract »|Full Text »|PDF »
Eukaryotic Translesion Polymerases and Their Roles and Regulation in DNA Damage Tolerance.
L. S. Waters, B. K. Minesinger, M. E. Wiltrout, S. D'Souza, R. V. Woodruff, and G. C. Walker (2009)
Microbiol. Mol. Biol. Rev.
73, 134-154
|Abstract »|Full Text »|PDF »
Incorporation into the prereplicative complex activates the Mcm2-7 helicase for Cdc7-Dbf4 phosphorylation.
L. I. Francis, J. C.W. Randell, T. J. Takara, L. Uchima, and S. P. Bell (2009)
Genes & Dev.
23, 643-654
|Abstract »|Full Text »|PDF »
Histone Ubiquitination Associates with BRCA1-Dependent DNA Damage Response.
J. Wu, M. S. Y. Huen, L.-Y. Lu, L. Ye, Y. Dou, M. Ljungman, J. Chen, and X. Yu (2009)
Mol. Cell. Biol.
29, 849-860
|Abstract »|Full Text »|PDF »
The Direct Interaction between 53BP1 and MDC1 Is Required for the Recruitment of 53BP1 to Sites of Damage.
Y. Eliezer, L. Argaman, A. Rhie, A. J. Doherty, and M. Goldberg (2009)
J. Biol. Chem.
284, 426-435
|Abstract »|Full Text »|PDF »
Rapid Recruitment of BRCA1 to DNA Double-Strand Breaks Is Dependent on Its Association with Ku80.
L. Wei, L. Lan, Z. Hong, A. Yasui, C. Ishioka, and N. Chiba (2008)
Mol. Cell. Biol.
28, 7380-7393
|Abstract »|Full Text »|PDF »
Negative Regulation of AKT Activation by BRCA1.
T. Xiang, A. Ohashi, Y. Huang, T. K. Pandita, T. Ludwig, S. N. Powell, and Q. Yang (2008)
Cancer Res.
68, 10040-10044
|Abstract »|Full Text »|PDF »
{gamma}-H2AX in recognition and signaling of DNA double-strand breaks in the context of chromatin.
A. Kinner, W. Wu, C. Staudt, and G. Iliakis (2008)
Nucleic Acids Res.
36, 5678-5694
|Abstract »|Full Text »|PDF »
Evidence for a Structural Relationship between BRCT Domains and the Helicase Domains of the Replication Initiators Encoded by the Polyomaviridae and Papillomaviridae Families of DNA Tumor Viruses.
A. Kumar, W. S. Joo, G. Meinke, S. Moine, E. N. Naumova, and P. A. Bullock (2008)
J. Virol.
82, 8849-8862
|Abstract »|Full Text »|PDF »
Early events in the mammalian response to DNA double-strand breaks.
L. C. Riches, A. M. Lynch, and N. J. Gooderham (2008)
Mutagenesis
23, 331-339
|Abstract »|Full Text »|PDF »
Structural and functional analysis of the Crb2-BRCT2 domain reveals distinct roles in checkpoint signaling and DNA damage repair.
M. L. Kilkenny, A. S. Dore, S. M. Roe, K. Nestoras, J. C.Y. Ho, F. Z. Watts, and L. H. Pearl (2008)
Genes & Dev.
22, 2034-2047
|Abstract »|Full Text »|PDF »
{gamma}-Irradiation-Induced DNA Damage Checkpoint Activation Involves Feedback Regulation between Extracellular Signal-Regulated Kinase 1/2 and BRCA1.
Y. Yan, C. P. Black, P. T. Cao, J. L. Haferbier, R. H. Kolb, R. S. Spieker, A. M. Ristow, and K. H. Cowan (2008)
Cancer Res.
68, 5113-5121
|Abstract »|Full Text »|PDF »
RAP80 Responds to DNA Damage Induced by Both Ionizing Radiation and UV Irradiation and Is Phosphorylated at Ser205.
J. Yan, X.-P. Yang, Y.-S. Kim, and A. M. Jetten (2008)
Cancer Res.
68, 4269-4276
|Abstract »|Full Text »|PDF »
Ubc13/Rnf8 ubiquitin ligases control foci formation of the Rap80/Abraxas/Brca1/Brcc36 complex in response to DNA damage.
Structural Requirements for the BARD1 Tumor Suppressor in Chromosomal Stability and Homology-directed DNA Repair.
M. Laufer, S. V. Nandula, A. P. Modi, S. Wang, M. Jasin, V. V. V. S. Murty, T. Ludwig, and R. Baer (2007)
J. Biol. Chem.
282, 34325-34333
|Abstract »|Full Text »|PDF »
The DNA Damage Response Mediator MDC1 Directly Interacts with the Anaphase-promoting Complex/Cyclosome.
G. Coster, Z. Hayouka, L. Argaman, C. Strauss, A. Friedler, M. Brandeis, and M. Goldberg (2007)
J. Biol. Chem.
282, 32053-32064
|Abstract »|Full Text »|PDF »
Microcephalin coordinates mitosis in the syncytial Drosophila embryo.
K. Brunk, B. Vernay, E. Griffith, N. L. Reynolds, D. Strutt, P. W. Ingham, and A. P. Jackson (2007)
J. Cell Sci.
120, 3578-3588
|Abstract »|Full Text »|PDF »
The ePHD protein SPBP interacts with TopBP1 and together they co-operate to stimulate Ets1-mediated transcription.
E. Sjottem, C. Rekdal, G. Svineng, S. S. Johnsen, H. Klenow, R. D. Uglehus, and T. Johansen (2007)
Nucleic Acids Res.
35, 6648-6662
|Abstract »|Full Text »|PDF »
Phospho-epitope binding by the BRCT domains of hPTIP controls multiple aspects of the cellular response to DNA damage.
I. M. Munoz, P. A. Jowsey, R. Toth, and J. Rouse (2007)
Nucleic Acids Res.
35, 5312-5322
|Abstract »|Full Text »|PDF »
NFBD1/MDC1 Associates with p53 and Regulates Its Function at the Crossroad between Cell Survival and Death in Response to DNA Damage.
M. Nakanishi, T. Ozaki, H. Yamamoto, T. Hanamoto, H. Kikuchi, K. Furuya, M. Asaka, D. Delia, and A. Nakagawara (2007)
J. Biol. Chem.
282, 22993-23004
|Abstract »|Full Text »|PDF »
Tripeptidyl-peptidase II Controls DNA Damage Responses and In vivo {gamma}-Irradiation Resistance of Tumors.
X. Hong, L. Lei, B. Kunert, R. Naredla, S. E. Applequist, A. Grandien, and R. Glas (2007)
Cancer Res.
67, 7165-7174
|Abstract »|Full Text »|PDF »
PTIP Associates with MLL3- and MLL4-containing Histone H3 Lysine 4 Methyltransferase Complex.
Y.-W. Cho, T. Hong, S. Hong, H. Guo, H. Yu, D. Kim, T. Guszczynski, G. R. Dressler, T. D. Copeland, M. Kalkum, et al. (2007)
J. Biol. Chem.
282, 20395-20406
|Abstract »|Full Text »|PDF »
Phosphorylation of ATR-Interacting Protein on Ser239 Mediates an Interaction with Breast-Ovarian Cancer Susceptibility 1 and Checkpoint Function.
M. Venere, A. Snyder, O. Zgheib, and T. D. Halazonetis (2007)
Cancer Res.
67, 6100-6105
|Abstract »|Full Text »|PDF »
The Rad9-Hus1-Rad1 (9-1-1) clamp activates checkpoint signaling via TopBP1.
S. Delacroix, J. M. Wagner, M. Kobayashi, K.-i. Yamamoto, and L. M. Karnitz (2007)
Genes & Dev.
21, 1472-1477
|Abstract »|Full Text »|PDF »
Abraxas and RAP80 Form a BRCA1 Protein Complex Required for the DNA Damage Response.
B. Wang, S. Matsuoka, B. A. Ballif, D. Zhang, A. Smogorzewska, S. P. Gygi, and S. J. Elledge (2007)
Science
316, 1194-1198
|Abstract »|Full Text »|PDF »
BRCA1 Contributes to Cell Cycle Arrest and Chemoresistance in Response to the Anticancer Agent Irofulven.
T. Wiltshire, J. Senft, Y. Wang, G. W. Konat, S. L. Wenger, E. Reed, and W. Wang (2007)
Mol. Pharmacol.
71, 1051-1060
|Abstract »|Full Text »|PDF »
Ataxia Telangiectasia Mutated (ATM) Is Essential for DNA-PKcs Phosphorylations at the Thr-2609 Cluster upon DNA Double Strand Break.
B. P. C. Chen, N. Uematsu, J. Kobayashi, Y. Lerenthal, A. Krempler, H. Yajima, M. Lobrich, Y. Shiloh, and D. J. Chen (2007)
J. Biol. Chem.
282, 6582-6587
|Abstract »|Full Text »|PDF »
Knockdown of ALR (MLL2) Reveals ALR Target Genes and Leads to Alterations in Cell Adhesion and Growth.
I. Issaeva, Y. Zonis, T. Rozovskaia, K. Orlovsky, C. M. Croce, T. Nakamura, A. Mazo, L. Eisenbach, and E. Canaani (2007)
Mol. Cell. Biol.
27, 1889-1903
|Abstract »|Full Text »|PDF »
The Saccharomyces cerevisiae 14-3-3 proteins Bmh1 and Bmh2 directly influence the DNA damage-dependent functions of Rad53.
Determination of Cancer Risk Associated with Germ Line BRCA1 Missense Variants by Functional Analysis.
M. A. Carvalho, S. M. Marsillac, R. Karchin, S. Manoukian, S. Grist, R. F. Swaby, T. P. Urmenyi, E. Rondinelli, R. Silva, L. Gayol, et al. (2007)
Cancer Res.
67, 1494-1501
|Abstract »|Full Text »|PDF »
The Tandem BRCT Domain of 53BP1 Is Not Required for Its Repair Function.
I. Ward, J.-E. Kim, K. Minn, C. C. Chini, G. Mer, and J. Chen (2006)
J. Biol. Chem.
281, 38472-38477
|Abstract »|Full Text »|PDF »
BRCA1 ubiquitinates its phosphorylation-dependent binding partner CtIP..
X. Yu, S. Fu, M. Lai, R. Baer, and J. Chen (2006)
Genes & Dev.
20, 1721-1726
|Abstract »|Full Text »|PDF »
Histone modification-dependent and -independent pathways for recruitment of checkpoint protein Crb2 to double-strand breaks..
L.-L. Du, T. M. Nakamura, and P. Russell (2006)
Genes & Dev.
20, 1583-1596
|Abstract »|Full Text »|PDF »
BRCA1 at the crossroad of multiple cellular pathways: approaches for therapeutic interventions..
A Dbf4p BRCA1 C-Terminal-Like Domain Required for the Response to Replication Fork Arrest in Budding Yeast.
C. Gabrielse, C. T. Miller, K. H. McConnell, A. DeWard, C. A. Fox, and M. Weinreich (2006)
Genetics
173, 541-555
|Abstract »|Full Text »|PDF »
Detection of a tandem BRCT in Nbs1 and Xrs2 with functional implications in the DNA damage response.
E. Becker, V. Meyer, H. Madaoui, and R. Guerois (2006)
Bioinformatics
22, 1289-1292
|Abstract »|Full Text »|PDF »
BRCA1 Promotes Induction of ssDNA by Ionizing Radiation..
B. P. Schlegel, F. M. Jodelka, and R. Nunez (2006)
Cancer Res.
66, 5181-5189
|Abstract »|Full Text »|PDF »
DNA Damage-Induced BARD1 Phosphorylation Is Critical for the Inhibition of Messenger RNA Processing by BRCA1/BARD1 Complex..
H.-S. Kim, H. Li, M. Cevher, A. Parmelee, D. Fonseca, F. E. Kleiman, and S. B. Lee (2006)
Cancer Res.
66, 4561-4565
|Abstract »|Full Text »|PDF »
Identification of Domains of BRCA1 Critical for the Ubiquitin-Dependent Inhibition of Centrosome Function..
S. Sankaran, L. M. Starita, A. M. Simons, and J. D. Parvin (2006)
Cancer Res.
66, 4100-4107
|Abstract »|Full Text »|PDF »
Characterization of the DNA Binding and Structural Properties of the BRCT Region of Human Replication Factor C p140 Subunit.
M. Kobayashi, F. Figaroa, N. Meeuwenoord, L. E. T. Jansen, and G. Siegal (2006)
J. Biol. Chem.
281, 4308-4317
|Abstract »|Full Text »|PDF »
BRCA1 DNA-Binding Activity Is Stimulated by BARD1.
A. M. Simons, A. A. Horwitz, L. M. Starita, K. Griffin, R. S. Williams, J.N. M. Glover, and J. D. Parvin (2006)
Cancer Res.
66, 2012-2018
|Abstract »|Full Text »|PDF »
BRCA1 Affects Lipid Synthesis through Its Interaction with Acetyl-CoA Carboxylase.
K. Moreau, E. Dizin, H. Ray, C. Luquain, E. Lefai, F. Foufelle, M. Billaud, G. M. Lenoir, and N. D. Venezia (2006)
J. Biol. Chem.
281, 3172-3181
|Abstract »|Full Text »|PDF »
Multifactorial contributions to an acute DNA damage response by BRCA1/BARD1-containing complexes.
R. A. Greenberg, B. Sobhian, S. Pathania, S. B. Cantor, Y. Nakatani, and D. M. Livingston (2006)
Genes & Dev.
20, 34-46
|Abstract »|Full Text »|PDF »
Inhibition of Aurora-B kinase activity by poly(ADP-ribosyl)ation in response to DNA damage.
L. Monaco, U. Kolthur-Seetharam, R. Loury, J. M.-d. Murcia, G. de Murcia, and P. Sassone-Corsi (2005)
PNAS
102, 14244-14248
|Abstract »|Full Text »|PDF »
Brc1-Mediated DNA Repair and Damage Tolerance.
D. M. Sheedy, D. Dimitrova, J. K. Rankin, K. L. Bass, K. M. Lee, C. Tapia-Alveal, S. H. Harvey, J. M. Murray, and M. J. O'Connell (2005)
Genetics
171, 457-468
|Abstract »|Full Text »|PDF »
Structure of the BRCT Repeat Domain of MDC1 and Its Specificity for the Free COOH-terminal End of the {gamma}-H2AX Histone Tail.
M. S. Lee, R. A. Edwards, G. L. Thede, and J. N. M. Glover (2005)
J. Biol. Chem.
280, 32053-32056
|Abstract »|Full Text »|PDF »
Diverse Biochemical Properties of Shp2 Mutants: IMPLICATIONS FOR DISEASE PHENOTYPES.
H. Keilhack, F. S. David, M. McGregor, L. C. Cantley, and B. G. Neel (2005)
J. Biol. Chem.
280, 30984-30993
|Abstract »|Full Text »|PDF »
Specificity of Protein Interactions Mediated by BRCT Domains of the XRCC1 DNA Repair Protein.
P. T. Beernink, M. Hwang, M. Ramirez, M. B. Murphy, S. A. Doyle, and M. P. Thelen (2005)
J. Biol. Chem.
280, 30206-30213
|Abstract »|Full Text »|PDF »