Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development
Xuemei Chen
Abstract:
Plant microRNAs (miRNAs) show a high degree of sequence complementarityto, and are believed to guide the cleavage of, their targetmessenger RNAs. Here, Ishow that miRNA172, which can base-pairwith the messenger RNA of a floral homeotic gene, APETALA2,regulates APETALA2 expression primarily through translationalinhibition. Elevated miRNA172 accumulation results in floralorgan identity defects similar to those in loss-of-functionapetala2 mutants. Elevated levels of mutant APETALA2 RNA withdisrupted miRNA172 base pairing, but not wild-type APETALA2RNA, result in elevated levels of APETALA2 protein and severefloral patterning defects. Therefore, miRNA172 likely acts incell-fate specification as a translational repressor of APETALA2in Arabidopsis flower development.
Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA.
E-mail: xuemei{at}waksman.rutgers.edu
The editors suggest the following Related Resources on Science sites:
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis.
R. Karlova, J. C. van Haarst, C. Maliepaard, H. van de Geest, A. G. Bovy, M. Lammers, G. C. Angenent, and R. A. de Maagd (2013)
J. Exp. Bot.
64, 1863-1878
|Abstract »|Full Text »|PDF »
Small Interfering RNA-Mediated Translation Repression Alters Ribosome Sensitivity to Inhibition by Cycloheximide in Chlamydomonas reinhardtii.
X. Ma, E.-J. Kim, I. Kook, F. Ma, A. Voshall, E. Moriyama, and H. Cerutti (2013)
PLANT CELL
25, 985-998
|Abstract »|Full Text »|PDF »
STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis.
S. Ben Chaabane, R. Liu, V. Chinnusamy, Y. Kwon, J.-h. Park, S. Y. Kim, J.-K. Zhu, S. W. Yang, and B.-h. Lee (2013)
Nucleic Acids Res.
41, 1984-1997
|Abstract »|Full Text »|PDF »
Tissue-Specific Silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a.
P. A. Manavella, D. Koenig, I. Rubio-Somoza, H. A. Burbano, C. Becker, and D. Weigel (2013)
Plant Physiology
161, 805-812
|Abstract »|Full Text »|PDF »
A Molecular Link between miRISCs and Deadenylases Provides New Insight into the Mechanism of Gene Silencing by MicroRNAs.
J. E. Braun, E. Huntzinger, and E. Izaurralde (2012)
Cold Spring Harb Perspect Biol
4, a012328
|Abstract »|Full Text »|PDF »
miR156 and miR390 Regulate tasiRNA Accumulation and Developmental Timing in Physcomitrella patens.
The ABC model of flower development: then and now.
J. L. Bowman, D. R. Smyth, and E. M. Meyerowitz (2012)
Development
139, 4095-4098
|Abstract »|Full Text »|PDF »
APETALA2 negatively regulates multiple floral organ identity genes in Arabidopsis by recruiting the co-repressor TOPLESS and the histone deacetylase HDA19.
Improved Growth and Stress Tolerance in the Arabidopsis oxt1 Mutant Triggered by Altered Adenine Metabolism.
S. Sukrong, K.-Y. Yun, P. Stadler, C. Kumar, T. Facciuolo, B. A. Moffatt, and D. L. Falcone (2012)
Mol Plant
5, 1310-1332
|Abstract »|Full Text »|PDF »
Spatial control of flowering by DELLA proteins in Arabidopsis thaliana.
V. C. Galvao, D. Horrer, F. Kuttner, and M. Schmid (2012)
Development
139, 4072-4082
|Abstract »|Full Text »|PDF »
MADS-box Genes and Floral Development: the Dark Side.
K. Heijmans, P. Morel, and M. Vandenbussche (2012)
J. Exp. Bot.
63, 5397-5404
|Abstract »|Full Text »|PDF »
Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants.
A. Carbonell, N. Fahlgren, H. Garcia-Ruiz, K. B. Gilbert, T. A. Montgomery, T. Nguyen, J. T. Cuperus, and J. C. Carrington (2012)
PLANT CELL
24, 3613-3629
|Abstract »|Full Text »|PDF »
IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress.
N. Kinoshita, H. Wang, H. Kasahara, J. Liu, C. MacPherson, Y. Machida, Y. Kamiya, M. A. Hannah, and N.-H. Chua (2012)
PLANT CELL
24, 3590-3602
|Abstract »|Full Text »|PDF »
Gibberellin Regulates the Arabidopsis Floral Transition through miR156-Targeted SQUAMOSA PROMOTER BINDING-LIKE Transcription Factors.
S. Yu, V. C. Galvao, Y.-C. Zhang, D. Horrer, T.-Q. Zhang, Y.-H. Hao, Y.-Q. Feng, S. Wang, M. Schmid, and J.-W. Wang (2012)
PLANT CELL
24, 3320-3332
|Abstract »|Full Text »|PDF »
A Comparative miRNAome Analysis Reveals Seven Fiber Initiation-Related and 36 Novel miRNAs in Developing Cotton Ovules.
Z.-M. Wang, W. Xue, C.-J. Dong, L.-G. Jin, S.-M. Bian, C. Wang, X.-Y. Wu, and J.-Y. Liu (2012)
Mol Plant
5, 889-900
|Abstract »|Full Text »|PDF »
A reversed framework for the identification of microRNA-target pairs in plants.
The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element.
T. T. Dinh, T. Girke, X. Liu, L. Yant, M. Schmid, and X. Chen (2012)
Development
139, 1978-1986
|Abstract »|Full Text »|PDF »
Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing.
Z. Tang, L. Zhang, C. Xu, S. Yuan, F. Zhang, Y. Zheng, and C. Zhao (2012)
Plant Physiology
159, 721-738
|Abstract »|Full Text »|PDF »
Arabidopsis RNA-binding Protein FCA Regulates MicroRNA172 Processing in Thermosensory Flowering.
J.-H. Jung, P. J. Seo, J. H. Ahn, and C.-M. Park (2012)
J. Biol. Chem.
287, 16007-16016
|Abstract »|Full Text »|PDF »
The microRNA156-SQUAMOSA PROMOTER BINDING PROTEIN-LIKE3 Module Regulates Ambient Temperature-Responsive Flowering via FLOWERING LOCUS T in Arabidopsis.
J. J. Kim, J. H. Lee, W. Kim, H. S. Jung, P. Huijser, and J. H. Ahn (2012)
Plant Physiology
159, 461-478
|Abstract »|Full Text »|PDF »
Computational Identification of MicroRNAs in Strawberry Expressed Sequence Tags and Validation of Their Precise Sequences by miR-RACE.
Q.-H. Dong, J. Han, H.-P. Yu, C. Wang, M.-Z. Zhao, H. Liu, A.-J. Ge, and J.-G. Fang (2012)
J. Hered.
103, 268-277
|Abstract »|Full Text »|PDF »
Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1.
Y. Zhou, D. Lu, C. Li, J. Luo, B.-F. Zhu, J. Zhu, Y. Shangguan, Z. Wang, T. Sang, B. Zhou, et al. (2012)
PLANT CELL
24, 1034-1048
|Abstract »|Full Text »|PDF »
Mutations in the GW-repeat protein SUO reveal a developmental function for microRNA-mediated translational repression in Arabidopsis.
Impact of down-regulation of starch branching enzyme IIb in rice by artificial microRNA- and hairpin RNA-mediated RNA silencing.
V. M. Butardo, M. A. Fitzgerald, A. R. Bird, M. J. Gidley, B. M. Flanagan, O. Larroque, A. P. Resurreccion, H. K. C. Laidlaw, S. A. Jobling, M. K. Morell, et al. (2011)
J. Exp. Bot.
62, 4927-4941
|Abstract »|Full Text »|PDF »
Correlation between number and position of floral organs in Arabidopsis.
The role of epigenetic processes in controlling flowering time in plants exposed to stress.
M. W. Yaish, J. Colasanti, and S. J. Rothstein (2011)
J. Exp. Bot.
62, 3727-3735
|Abstract »|Full Text »|PDF »
LEUNIG and SEUSS co-repressors regulate miR172 expression in Arabidopsis flowers.
B. Grigorova, C. Mara, C. Hollender, P. Sijacic, X. Chen, and Z. Liu (2011)
Development
138, 2451-2456
|Abstract »|Full Text »|PDF »
SplamiR--prediction of spliced miRNAs in plants.
C. J. Thieme, L. Gramzow, D. Lobbes, and G. Theissen (2011)
Bioinformatics
27, 1215-1223
|Abstract »|Full Text »|PDF »
MicroRNA activity in the Arabidopsis male germline.
F. Borges, P. A. Pereira, R. K. Slotkin, R. A. Martienssen, and J. D. Becker (2011)
J. Exp. Bot.
62, 1611-1620
|Abstract »|Full Text »|PDF »
Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening.
R. Karlova, F. M. Rosin, J. Busscher-Lange, V. Parapunova, P. T. Do, A. R. Fernie, P. D. Fraser, C. Baxter, G. C. Angenent, and R. A. de Maagd (2011)
PLANT CELL
23, 923-941
|Abstract »|Full Text »|PDF »
Regulation of flowering time and floral patterning by miR172.
WAVY LEAF1, an Ortholog of Arabidopsis HEN1, Regulates Shoot Development by Maintaining MicroRNA and Trans-Acting Small Interfering RNA Accumulation in Rice.
M. Abe, T. Yoshikawa, M. Nosaka, H. Sakakibara, Y. Sato, Y. Nagato, and J.-i. Itoh (2010)
Plant Physiology
154, 1335-1346
|Abstract »|Full Text »|PDF »
Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome.
S. Laubinger, G. Zeller, S. R. Henz, S. Buechel, T. Sachsenberg, J.-W. Wang, G. Ratsch, and D. Weigel (2010)
PNAS
107, 17466-17473
|Abstract »|Full Text »|PDF »
Proinflammatory Role for let-7 MicroRNAS in Experimental Asthma.
S. Polikepahad, J. M. Knight, A. O. Naghavi, T. Oplt, C. J. Creighton, C. Shaw, A. L. Benham, J. Kim, B. Soibam, R. A. Harris, et al. (2010)
J. Biol. Chem.
285, 30139-30149
|Abstract »|Full Text »|PDF »
In Vitro and In Vivo Characterization of MicroRNA-Targeted Alphavirus Replicon and Helper RNAs.
K. I. Kamrud, V. M. Coffield, G. Owens, C. Goodman, K. Alterson, M. Custer, M. A. Murphy, W. Lewis, S. Timberlake, E. K. Wansley, et al. (2010)
J. Virol.
84, 7713-7725
|Abstract »|Full Text »|PDF »
Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2.
L. Yant, J. Mathieu, T. T. Dinh, F. Ott, C. Lanz, H. Wollmann, X. Chen, and M. Schmid (2010)
PLANT CELL
22, 2156-2170
|Abstract »|Full Text »|PDF »
Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis.
H. Lee, S. J. Yoo, J. H. Lee, W. Kim, S. K. Yoo, H. Fitzgerald, J. C. Carrington, and J. H. Ahn (2010)
Nucleic Acids Res.
38, 3081-3093
|Abstract »|Full Text »|PDF »
Methodological framework for functional characterization of plant microRNAs.
M. Chen, Y. Meng, C. Mao, D. Chen, and P. Wu (2010)
J. Exp. Bot.
61, 2271-2280
|Abstract »|Full Text »|PDF »
microRNA, seeds, and Darwin?: diverse function of miRNA in seed biology and plant responses to stress.
R. C. Martin, P.-P. Liu, N. A. Goloviznina, and H. Nonogaki (2010)
J. Exp. Bot.
61, 2229-2234
|Abstract »|Full Text »|PDF »
Co-ordination of developmental processes by small RNAs during leaf development.
Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage.
S. K. Nair, N. Wang, Y. Turuspekov, M. Pourkheirandish, S. Sinsuwongwat, G. Chen, M. Sameri, A. Tagiri, I. Honda, Y. Watanabe, et al. (2010)
PNAS
107, 490-495
|Abstract »|Full Text »|PDF »
Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants.
C. Zeng, W. Wang, Y. Zheng, X. Chen, W. Bo, S. Song, W. Zhang, and M. Peng (2010)
Nucleic Acids Res.
38, 981-995
|Abstract »|Full Text »|PDF »
Control of cell proliferation in Arabidopsis thaliana by microRNA miR396.
R. E. Rodriguez, M. A. Mecchia, J. M. Debernardi, C. Schommer, D. Weigel, and J. F. Palatnik (2010)
Development
137, 103-112
|Abstract »|Full Text »|PDF »
Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome.
C. Addo-Quaye, J. A. Snyder, Y. B. Park, Y.-F. Li, R. Sunkar, and M. J. Axtell (2009)
RNA
15, 2112-2121
|Abstract »|Full Text »|PDF »
Deciphering the diversity of small RNAs in plants: the long and short of it.
F. Schwach, S. Moxon, V. Moulton, and T. Dalmay (2009)
Briefings in Functional Genomics
8, 472-481
|Abstract »|Full Text »|PDF »
Rice MicroRNA Effector Complexes and Targets.
L. Wu, Q. Zhang, H. Zhou, F. Ni, X. Wu, and Y. Qi (2009)
PLANT CELL
21, 3421-3435
|Abstract »|Full Text »|PDF »
The SPOROCYTELESS/NOZZLE Gene Is Involved in Controlling Stamen Identity in Arabidopsis.
X. Liu, J. Huang, S. Parameswaran, T. Ito, B. Seubert, M. Auer, A. Rymaszewski, G. Jia, H. A. Owen, and D. Zhao (2009)
Plant Physiology
151, 1401-1411
|Abstract »|Full Text »|PDF »
Graft-transmissible induction of potato tuberization by the microRNA miR172.
A. Martin, H. Adam, M. Diaz-Mendoza, M. Zurczak, N. D. Gonzalez-Schain, and P. Suarez-Lopez (2009)
Development
136, 2873-2881
|Abstract »|Full Text »|PDF »
Transcriptome Analyses Revealed Diverse Expression Changes in ago1 and hyl1 Arabidopsis Mutants.
Y. Kurihara, E. Kaminuma, A. Matsui, M. Kawashima, M. Tanaka, T. Morosawa, J. Ishida, Y. Mochizuki, K. Shinozaki, T. Toyoda, et al. (2009)
Plant Cell Physiol.
50, 1715-1720
|Abstract »|Full Text »|PDF »
Time to Stop: Flower Meristem Termination.
N. Prunet, P. Morel, I. Negrutiu, and C. Trehin (2009)
Plant Physiology
150, 1764-1772
|Full Text »|PDF »
Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana.
L. Alves-Junior, S. Niemeier, A. Hauenschild, M. Rehmsmeier, and T. Merkle (2009)
Nucleic Acids Res.
37, 4010-4021
|Abstract »|Full Text »|PDF »
Biochemical Evidence for Translational Repression by Arabidopsis MicroRNAs.
E. Lanet, E. Delannoy, R. Sormani, M. Floris, P. Brodersen, P. Crete, O. Voinnet, and C. Robaglia (2009)
PLANT CELL
21, 1762-1768
|Abstract »|Full Text »|PDF »
Dual roles of the bZIP transcription factor PERIANTHIA in the control of floral architecture and homeotic gene expression.
A. T. Maier, S. Stehling-Sun, H. Wollmann, M. Demar, R. L. Hong, S. Haubeiss, D. Weigel, and J. U. Lohmann (2009)
Development
136, 1613-1620
|Abstract »|Full Text »|PDF »
MicroRNA-127 modulates fetal lung development.
M. Bhaskaran, Y. Wang, H. Zhang, T. Weng, P. Baviskar, Y. Guo, D. Gou, and L. Liu (2009)
Physiol Genomics
37, 268-278
|Abstract »|Full Text »|PDF »
Current tools for the identification of miRNA genes and their targets.
N. D. Mendes, A. T. Freitas, and M.-F. Sagot (2009)
Nucleic Acids Res.
37, 2419-2433
|Abstract »|Full Text »|PDF »
Gibberellin as a factor in floral regulatory networks.
B. C. Meyers, M. J. Axtell, B. Bartel, D. P. Bartel, D. Baulcombe, J. L. Bowman, X. Cao, J. C. Carrington, X. Chen, P. J. Green, et al. (2008)
PLANT CELL
20, 3186-3190
|Abstract »|Full Text »|PDF »
Two Cap-Binding Proteins CBP20 and CBP80 are Involved in Processing Primary MicroRNAs.
S. Kim, J.-Y. Yang, J. Xu, I.-C. Jang, M. J. Prigge, and N.-H. Chua (2008)
Plant Cell Physiol.
49, 1634-1644
|Abstract »|Full Text »|PDF »
Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells.
Z. Zhang, L. Wei, X. Zou, Y. Tao, Z. Liu, and Y. Zheng (2008)
Ann. Bot.
102, 509-519
|Abstract »|Full Text »|PDF »
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening.
S. Moxon, R. Jing, G. Szittya, F. Schwach, R. L. Rusholme Pilcher, V. Moulton, and T. Dalmay (2008)
Genome Res.
18, 1602-1609
|Abstract »|Full Text »|PDF »
Transcriptome-Wide Analysis of Uncapped mRNAs in Arabidopsis Reveals Regulation of mRNA Degradation.
Y. Jiao, J. L. Riechmann, and E. M. Meyerowitz (2008)
PLANT CELL
20, 2571-2585
|Abstract »|Full Text »|PDF »
Floral meristem initiation and meristem cell fate are regulated by the maize AP2 genes ids1 and sid1.