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Argonaute2 Is the Catalytic Engine of Mammalian RNAi
Jidong Liu,1*
Michelle A. Carmell,1,2*
Fabiola V. Rivas,1
Carolyn G. Marsden,1
J. Michael Thomson,3
Ji-Joon Song,1
Scott M. Hammond,3
Leemor Joshua-Tor,1
Gregory J. Hannon1
Abstract:
Gene silencing through RNA interference (RNAi) is carried outby RISC, the RNA-induced silencing complex. RISC contains twosignature components, small interfering RNAs (siRNAs) and Argonautefamily proteins. Here, we show that the multiple Argonaute proteinspresent in mammals are both biologically and biochemically distinct,with a single mammalian family member, Argonaute2, being responsiblefor messenger RNA cleavage activity. This protein is essentialfor mouse development, and cells lacking Argonaute2 are unableto mount an experimental response to siRNAs. Mutations withina cryptic ribonuclease H domain within Argonaute2, as identifiedby comparison with the structure of an archeal Argonaute protein,inactivate RISC. Thus, our evidence supports a model in whichArgonaute contributes "Slicer" activity to RISC, providing thecatalytic engine for RNAi.
1 Cold Spring Harbor Laboratory, Watson School of Biological Sciences, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. 2 Program in Genetics, Stony Brook University, Stony Brook, NY 11794, USA. 3 Department of Cell and Developmental Biology, University of North Carolina, Chapel Hill, NC 27599, USA.
Argonaute2 Regulates the Pancreatic {beta}-Cell Secretome.
S. G. Tattikota, M. D. Sury, T. Rathjen, H.-H. Wessels, A. K. Pandey, X. You, C. Becker, W. Chen, M. Selbach, and M. N. Poy (2013)
Mol. Cell. Proteomics
12, 1214-1225
|Abstract »|Full Text »|PDF »
Loop-miRs: active microRNAs generated from single-stranded loop regions.
J. Winter, S. Link, D. Witzigmann, C. Hildenbrand, C. Previti, and S. Diederichs (2013)
Nucleic Acids Res.
|Abstract »|Full Text »|PDF »
Context-specific microRNA function in developmental complexity.
A. P. Carroll, P. A. Tooney, and M. J. Cairns (2013)
J Mol Cell Biol
5, 73-84
|Abstract »|Full Text »|PDF »
Dicer-independent processing of short hairpin RNAs.
Y. P. Liu, N. C. T. Schopman, and B. Berkhout (2013)
Nucleic Acids Res.
41, 3723-3733
|Abstract »|Full Text »|PDF »
Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals.
K. Okamura, E. Ladewig, L. Zhou, and E. C. Lai (2013)
Genes & Dev.
27, 778-792
|Abstract »|Full Text »|PDF »
Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9).
Circular RNAs are abundant, conserved, and associated with ALU repeats.
W. R. Jeck, J. A. Sorrentino, K. Wang, M. K. Slevin, C. E. Burd, J. Liu, W. F. Marzluff, and N. E. Sharpless (2013)
RNA
19, 141-157
|Abstract »|Full Text »|PDF »
Rapid and specific purification of Argonaute-small RNA complexes from crude cell lysates.
C. F. Flores-Jasso, W. E. Salomon, and P. D. Zamore (2013)
RNA
19, 271-279
|Abstract »|Full Text »|PDF »
Combinatorial mRNA binding by AUF1 and Argonaute 2 controls decay of selected target mRNAs.
X. Wu, S. Chesoni, G. Rondeau, C. Tempesta, R. Patel, S. Charles, N. Daginawala, B. E. Zucconi, A. Kishor, G. Xu, et al. (2013)
Nucleic Acids Res.
41, 2644-2658
|Abstract »|Full Text »|PDF »
tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.
R. L. Maute, C. Schneider, P. Sumazin, A. Holmes, A. Califano, K. Basso, and R. Dalla-Favera (2013)
PNAS
110, 1404-1409
|Abstract »|Full Text »|PDF »
Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2.
Mechanism of allele-selective inhibition of huntingtin expression by duplex RNAs that target CAG repeats: function through the RNAi pathway.
J. Hu, J. Liu, D. Yu, Y. Chu, and D. R. Corey (2012)
Nucleic Acids Res.
40, 11270-11280
|Abstract »|Full Text »|PDF »
Alternative RISC assembly: Binding and repression of microRNA-mRNA duplexes by human Ago proteins.
M. M. Janas, B. Wang, A. S. Harris, M. Aguiar, J. M. Shaffer, Y. V. B. K. Subrahmanyam, M. A. Behlke, K. W. Wucherpfennig, S. P. Gygi, E. Gagnon, et al. (2012)
RNA
18, 2041-2055
|Abstract »|Full Text »|PDF »
The slicing activity of miRNA-specific Argonautes is essential for the miRNA pathway in C. elegans.
HIV-1 Replication and APOBEC3 Antiviral Activity Are Not Regulated by P Bodies.
P. K. Phalora, N. M. Sherer, S. M. Wolinsky, C. M. Swanson, and M. H. Malim (2012)
J. Virol.
86, 11712-11724
|Abstract »|Full Text »|PDF »
Dicer-dependent and -independent Argonaute2 Protein Interaction Networks in Mammalian Cells.
A. Frohn, H. C. Eberl, J. Stohr, E. Glasmacher, S. Rudel, V. Heissmeyer, M. Mann, and G. Meister (2012)
Mol. Cell. Proteomics
11, 1442-1456
|Abstract »|Full Text »|PDF »
Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing.
A. Dallas, H. Ilves, Q. Ge, P. Kumar, J. Shorenstein, S. A. Kazakov, T. L. Cuellar, M. T. McManus, M. A. Behlke, and B. H. Johnston (2012)
Nucleic Acids Res.
40, 9255-9271
|Abstract »|Full Text »|PDF »
microRNAs associated with the different human Argonaute proteins.
A. Dueck, C. Ziegler, A. Eichner, E. Berezikov, and G. Meister (2012)
Nucleic Acids Res.
40, 9850-9862
|Abstract »|Full Text »|PDF »
APOBEC3G Inhibits MicroRNA-mediated Repression of Translation by Interfering with the Interaction between Argonaute-2 and MOV10.
C. Liu, X. Zhang, F. Huang, B. Yang, J. Li, B. Liu, H. Luo, P. Zhang, and H. Zhang (2012)
J. Biol. Chem.
287, 29373-29383
|Abstract »|Full Text »|PDF »
Mammalian GW220/TNGW1 is essential for the formation of GW/P bodies containing miRISC.
V. Castilla-Llorente, L. Spraggon, M. Okamura, S. Naseeruddin, M. Adamow, S. Qamar, and J. Liu (2012)
J. Cell Biol.
198, 529-544
|Abstract »|Full Text »|PDF »
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs.
Z. Li, C. Ender, G. Meister, P. S. Moore, Y. Chang, and B. John (2012)
Nucleic Acids Res.
40, 6787-6799
|Abstract »|Full Text »|PDF »
Argonaute identity defines the length of mature mammalian microRNAs.
P. K. Juvvuna, P. Khandelia, L. M. Lee, and E. V. Makeyev (2012)
Nucleic Acids Res.
40, 6808-6820
|Abstract »|Full Text »|PDF »
Murine cytomegalovirus infection of cultured mouse cells induces expression of miR-7a.
Biogenesis of mammalian microRNAs by a non-canonical processing pathway.
M. A. Havens, A. A. Reich, D. M. Duelli, and M. L. Hastings (2012)
Nucleic Acids Res.
40, 4626-4640
|Abstract »|Full Text »|PDF »
Enhanced Susceptibility of Ago1/3 Double-Null Mice to Influenza A Virus Infection.
M. Van Stry, T. H. Oguin III, S. Cheloufi, P. Vogel, M. Watanabe, M. R. Pillai, P. Dash, P. G. Thomas, G. J. Hannon, and M. Bix (2012)
J. Virol.
86, 4151-4157
|Abstract »|Full Text »|PDF »
The RDE-10/RDE-11 complex triggers RNAi-induced mRNA degradation by association with target mRNA in C. elegans.
H. Yang, Y. Zhang, J. Vallandingham, H. Li, L. Florens, and H. Y. Mak (2012)
Genes & Dev.
26, 846-856
|Abstract »|Full Text »|PDF »
Quantitative functions of Argonaute proteins in mammalian development.
D. Wang, Z. Zhang, E. O'Loughlin, T. Lee, S. Houel, D. O'Carroll, A. Tarakhovsky, N. G. Ahn, and R. Yi (2012)
Genes & Dev.
26, 693-704
|Abstract »|Full Text »|PDF »
Expression determinants of mammalian argonaute proteins in mediating gene silencing.
P. N. Valdmanis, S. Gu, N. Schuermann, P. Sethupathy, D. Grimm, and M. A. Kay (2012)
Nucleic Acids Res.
40, 3704-3713
|Abstract »|Full Text »|PDF »
Widespread RNA 3'-end oligouridylation in mammals.
Y. S. Choi, W. Patena, A. D. Leavitt, and M. T. McManus (2012)
RNA
18, 394-401
|Abstract »|Full Text »|PDF »
MECHANISMS IN ENDOCRINOLOGY: Micro-RNAs: targets for enhancing osteoblast differentiation and bone formation.
H. Taipaleenmaki, L. Bjerre Hokland, L. Chen, S. Kauppinen, and M. Kassem (2012)
Eur. J. Endocrinol.
166, 359-371
|Abstract »|Full Text »|PDF »
Trinucleotide Repeat Containing 6a (Tnrc6a)-mediated MicroRNA Function Is Required for Development of Yolk Sac Endoderm.
Z. Jiang, N. Yu, P. Kuang, M. Chen, F. Shao, G. Martin, D. H. K. Chui, W. V. Cardoso, X. Ai, and J. Lu (2012)
J. Biol. Chem.
287, 5979-5987
|Abstract »|Full Text »|PDF »
Strand antagonism in RNAi: an explanation of differences in potency between intracellularly expressed siRNA and shRNA.
X. Jin, T. Sun, C. Zhao, Y. Zheng, Y. Zhang, W. Cai, Q. He, K. Taira, L. Zhang, and D. Zhou (2012)
Nucleic Acids Res.
40, 1797-1806
|Abstract »|Full Text »|PDF »
Expanding the action of duplex RNAs into the nucleus: redirecting alternative splicing.
Direct evidence of nuclear Argonaute distribution during transcriptional silencing links the actin cytoskeleton to nuclear RNAi machinery in human cells.
C. L. Ahlenstiel, H. G. W. Lim, D. A. Cooper, T. Ishida, A. D. Kelleher, and K. Suzuki (2012)
Nucleic Acids Res.
40, 1579-1595
|Abstract »|Full Text »|PDF »
Dicer is dispensable for asymmetric RISC loading in mammals.
Different Mutations in Three Prime Repair Exonuclease 1 and Ribonuclease H2 Genes Affect Clinical Features in Aicardi-Goutieres Syndrome.
A. Izzotti, M. Longobardi, C. Cartiglia, F. Anzuini, P. Arrigo, E. Fazzi, S. Orcesi, R. L. Piana, and A. Pulliero (2012)
J Child Neurol
27, 51-60
|Abstract »|Full Text »|PDF »
miRNA and mammalian male germ cells.
S. C. McIver, S. D. Roman, B. Nixon, and E. A. McLaughlin (2012)
Hum. Reprod. Update
18, 44-59
|Abstract »|Full Text »|PDF »
A microRNA derived from an apparent canonical biogenesis pathway regulates variant surface protein gene expression in Giardia lamblia.
Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing.
J. A. Broderick, W. E. Salomon, S. P. Ryder, N. Aronin, and P. D. Zamore (2011)
RNA
17, 1858-1869
|Abstract »|Full Text »|PDF »
Ancestral Roles of Small RNAs: An Ago-Centric Perspective.
L. Joshua-Tor and G. J. Hannon (2011)
Cold Spring Harb Perspect Biol
3, a003772
|Abstract »|Full Text »|PDF »
Molecular insights into miRNA processing by Arabidopsis thaliana SERRATE.
S. Machida, H.-Y. Chen, and Y. Adam Yuan (2011)
Nucleic Acids Res.
39, 7828-7836
|Abstract »|Full Text »|PDF »
Experimental strategies for microRNA target identification.
D. W. Thomson, C. P. Bracken, and G. J. Goodall (2011)
Nucleic Acids Res.
39, 6845-6853
|Abstract »|Full Text »|PDF »
A Lasso regression model for the construction of microRNA-target regulatory networks.
Y. Lu, Y. Zhou, W. Qu, M. Deng, and C. Zhang (2011)
Bioinformatics
27, 2406-2413
|Abstract »|Full Text »|PDF »
Mir-290-295 deficiency in mice results in partially penetrant embryonic lethality and germ cell defects.
L. A. Medeiros, L. M. Dennis, M. E. Gill, H. Houbaviy, S. Markoulaki, D. Fu, A. C. White, O. Kirak, P. A. Sharp, D. C. Page, et al. (2011)
PNAS
108, 14163-14168
|Abstract »|Full Text »|PDF »
Flow-Dependent Regulation of Kruppel-Like Factor 2 Is Mediated by MicroRNA-92a.
W. Wu, H. Xiao, A. Laguna-Fernandez, G. Villarreal Jr, K.-C. Wang, G. G. Geary, Y. Zhang, W.-C. Wang, H.-D. Huang, J. Zhou, et al. (2011)
Circulation
124, 633-641
|Abstract »|Full Text »|PDF »
Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis.
E. A. Devers, A. Branscheid, P. May, and F. Krajinski (2011)
Plant Physiology
156, 1990-2010
|Abstract »|Full Text »|PDF »
The use of RNAi technologies for gene knockdown in zebrafish.
A. Kelly and A. F. Hurlstone (2011)
Briefings in Functional Genomics
10, 189-196
|Abstract »|Full Text »|PDF »
Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage.
C. P. Bracken, J. M. Szubert, T. R. Mercer, M. E. Dinger, D. W. Thomson, J. S. Mattick, M. Z. Michael, and G. J. Goodall (2011)
Nucleic Acids Res.
39, 5658-5668
|Abstract »|Full Text »|PDF »
What does it take to make a developmentally competent mammalian egg?.
M. Zuccotti, V. Merico, S. Cecconi, C. A. Redi, and S. Garagna (2011)
Hum. Reprod. Update
17, 525-540
|Abstract »|Full Text »|PDF »
Direct visualization at the single-cell level of siRNA electrotransfer into cancer cells.
A. Paganin-Gioanni, E. Bellard, J. M. Escoffre, M. P. Rols, J. Teissie, and M. Golzio (2011)
PNAS
108, 10443-10447
|Abstract »|Full Text »|PDF »
MicroRNAs and their roles in mammalian stem cells.
Limiting Ago protein restricts RNAi and microRNA biogenesis during early development in Xenopus laevis.
E. Lund, M. D. Sheets, S. B. Imboden, and J. E. Dahlberg (2011)
Genes & Dev.
25, 1121-1131
|Abstract »|Full Text »|PDF »
Thermodynamic stability of small hairpin RNAs highly influences the loading process of different mammalian Argonautes.
S. Gu, L. Jin, F. Zhang, Y. Huang, D. Grimm, J. J. Rossi, and M. A. Kay (2011)
PNAS
108, 9208-9213
|Abstract »|Full Text »|PDF »
Increased siRNA duplex stability correlates with reduced off-target and elevated on-target effects.
S. Petri, A. Dueck, G. Lehmann, N. Putz, S. Rudel, E. Kremmer, and G. Meister (2011)
RNA
17, 737-749
|Abstract »|Full Text »|PDF »
Divergent GW182 functional domains in the regulation of translational silencing.
B. Yao, S. Li, H. M. Jung, S. L. Lian, G. X. Abadal, F. Han, M. J. Fritzler, and E. K. L. Chan (2011)
Nucleic Acids Res.
39, 2534-2547
|Abstract »|Full Text »|PDF »
Unexpected origins of the enhanced pairing affinity of 2'-fluoro-modified RNA.
P. S. Pallan, E. M. Greene, P. A. Jicman, R. K. Pandey, M. Manoharan, E. Rozners, and M. Egli (2011)
Nucleic Acids Res.
39, 3482-3495
|Abstract »|Full Text »|PDF »
Cell stress is related to re-localization of Argonaute 2 and to decreased RNA interference in human cells.
A. Detzer, C. Engel, W. Wunsche, and G. Sczakiel (2011)
Nucleic Acids Res.
39, 2727-2741
|Abstract »|Full Text »|PDF »
Ebolavirus Proteins Suppress the Effects of Small Interfering RNA by Direct Interaction with the Mammalian RNA Interference Pathway.
G. Fabozzi, C. S. Nabel, M. A. Dolan, and N. J. Sullivan (2011)
J. Virol.
85, 2512-2523
|Abstract »|Full Text »|PDF »
Human Ago2 Is Required for Efficient MicroRNA 122 Regulation of Hepatitis C Virus RNA Accumulation and Translation.
J. A. Wilson, C. Zhang, A. Huys, and C. D. Richardson (2011)
J. Virol.
85, 2342-2350
|Abstract »|Full Text »|PDF »
Phosphorylation of human Argonaute proteins affects small RNA binding.
S. Rudel, Y. Wang, R. Lenobel, R. Korner, H.-H. Hsiao, H. Urlaub, D. Patel, and G. Meister (2011)
Nucleic Acids Res.
39, 2330-2343
|Abstract »|Full Text »|PDF »
A role for human Dicer in pre-RISC loading of siRNAs.
K. Sakurai, M. Amarzguioui, D.-H. Kim, J. Alluin, B. Heale, M.-s. Song, A. Gatignol, M. A. Behlke, and J. J. Rossi (2011)
Nucleic Acids Res.
39, 1510-1525
|Abstract »|Full Text »|PDF »
R2D2 Organizes Small Regulatory RNA Pathways in Drosophila.
K. Okamura, N. Robine, Y. Liu, Q. Liu, and E. C. Lai (2011)
Mol. Cell. Biol.
31, 884-896
|Abstract »|Full Text »|PDF »
MicroRNA in Osteoarthritis.
C. Yu, W.-P. Chen, and X.-H. Wang (2011)
Journal of International Medical Research
39, 1-9
|Abstract »|PDF »