Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
Abstract:
Small RNA guidesmicroRNAs, small interfering RNAs, andrepeat-associated small interfering RNAs, 21 to 30 nucleotidesin lengthshape diverse cellular pathways, from chromosomearchitecture to stem cell maintenance. Fifteen years after thediscovery of RNA silencing, we are only just beginning to understandthe depth and complexity of how these RNAs regulate gene expressionand to consider their role in shaping the evolutionary historyof higher eukaryotes.
Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
* To whom correspondence should be addressed. E-mail: phillip.zamore{at}umassmed.edu
The editors suggest the following Related Resources on Science sites:
In Science Magazine
INTRODUCTION TO SPECIAL ISSUE
Guy Riddihough (2 September 2005) Science309 (5740), 1507.
[DOI: 10.1126/science.309.5740.1507] |Summary »|PDF »
THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Thyroid Hormone Regulation of miR-21 Enhances Migration and Invasion of Hepatoma.
The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains.
M. P. M. H. Benoit, L. Imbert, A. Palencia, J. Perard, C. Ebel, J. Boisbouvier, and M. J. Plevin (2013)
Nucleic Acids Res.
41, 4241-4252
|Abstract »|Full Text »|PDF »
Functional variants in TNFAIP8 associated with cervical cancer susceptibility and clinical outcomes.
MicroRNA-17-92a upregulation by estrogen leads to Bim targeting and inhibition of osteoblast apoptosis.
L. Guo, J. Xu, J. Qi, L. Zhang, J. Wang, J. Liang, N. Qian, H. Zhou, L. Wei, and L. Deng (2013)
J. Cell Sci.
126, 978-988
|Abstract »|Full Text »|PDF »
Estrogen Receptor-Mediated Regulation of MicroRNA Inhibits Proliferation of Vascular Smooth Muscle Cells.
J. Zhao, G. A. Imbrie, W. E. Baur, L. K. Iyer, M. J. Aronovitz, T. B. Kershaw, G. M. Haselmann, Q. Lu, and R. H. Karas (2013)
Arterioscler Thromb Vasc Biol
33, 257-265
|Abstract »|Full Text »|PDF »
Association of miR-146aC>G, miR-196a2T>C, and miR-499A>G Polymorphisms With Risk of Premature Ovarian Failure in Korean Women.
H. Rah, Y. J. Jeon, S. H. Shim, S. H. Cha, D. H. Choi, H. Kwon, J. H. Kim, J. E. Shin, and N. K. Kim (2013)
Reproductive Sciences
20, 60-68
|Abstract »|Full Text »|PDF »
Identification of Serum MicroRNA-21 as a Biomarker for Chemosensitivity and Prognosis in Human Osteosarcoma.
J. Yuan, L. Chen, X. Chen, W. Sun, and X. Zhou (2012)
Journal of International Medical Research
40, 2090-2097
|Abstract »|Full Text »|PDF »
MiR-196a binding-site SNP regulates RAP1A expression contributing to esophageal squamous cell carcinoma risk and metastasis.
K. Wang, J. Li, H. Guo, X. Xu, G. Xiong, X. Guan, B. Liu, J. Li, X. Chen, K. Yang, et al. (2012)
Carcinogenesis
33, 2147-2154
|Abstract »|Full Text »|PDF »
MicroRNA Dissects Out Dangerous Pancreatic Cysts from All the Rest.
AS1DHRS4, a head-to-head natural antisense transcript, silences the DHRS4 gene cluster in cis and trans.
Q. Li, Z. Su, X. Xu, G. Liu, X. Song, R. Wang, X. Sui, T. Liu, X. Chang, and D. Huang (2012)
PNAS
109, 14110-14115
|Abstract »|Full Text »|PDF »
Differentially expressed plasma microRNAs in premature ovarian failure patients and the potential regulatory function of mir-23a in granulosa cell apoptosis.
X. Yang, Y. Zhou, S. Peng, L. Wu, H.-Y. Lin, S. Wang, and H. Wang (2012)
Reproduction
144, 235-244
|Abstract »|Full Text »|PDF »
A-to-I editing of microRNAs in the mammalian brain increases during development.
Y. Ekdahl, H. S. Farahani, M. Behm, J. Lagergren, and M. Ohman (2012)
Genome Res.
22, 1477-1487
|Abstract »|Full Text »|PDF »
Altered MicroRNA Expression Profile in Human Pituitary GH Adenomas: Down-Regulation of miRNA Targeting HMGA1, HMGA2, and E2F1.
D. D'Angelo, D. Palmieri, P. Mussnich, M. Roche, A. Wierinckx, G. Raverot, M. Fedele, C. M. Croce, J. Trouillas, and A. Fusco (2012)
J. Clin. Endocrinol. Metab.
97, E1128-E1138
|Abstract »|Full Text »|PDF »
Impact of microRNA regulation on variation in human gene expression.
MicroRNA-378a-5p promotes trophoblast cell survival, migration and invasion by targeting Nodal.
L. Luo, G. Ye, L. Nadeem, G. Fu, B. B. Yang, E. Honarparvar, C. Dunk, S. Lye, and C. Peng (2012)
J. Cell Sci.
125, 3124-3132
|Abstract »|Full Text »|PDF »
Deployment of the human immunodeficiency virus type 1 protein arsenal: combating the host to enhance viral transcription and providing targets for therapeutic development.
S. Dahiya, M. R. Nonnemacher, and B. Wigdahl (2012)
J. Gen. Virol.
93, 1151-1172
|Abstract »|Full Text »|PDF »
MicroRNA-145 targets vascular endothelial growth factor and inhibits invasion and metastasis of osteosarcoma cells.
L. Fan, Q. Wu, X. Xing, Y. Wei, and Z. Shao (2012)
Acta Biochim Biophys Sin
44, 407-414
|Abstract »|Full Text »|PDF »
Serum microRNA profiling and breast cancer risk: the use of miR-484/191 as endogenous controls.
Z. Hu, J. Dong, L.-E. Wang, H. Ma, J. Liu, Y. Zhao, J. Tang, X. Chen, J. Dai, Q. Wei, et al. (2012)
Carcinogenesis
33, 828-834
|Abstract »|Full Text »|PDF »
Downregulation of BCL2 by miRNAs augments drug-induced apoptosis - a combined computational and experimental approach.
microRNA 17/20 inhibits cellular invasion and tumor metastasis in breast cancer by heterotypic signaling.
Z. Yu, N. E. Willmarth, J. Zhou, S. Katiyar, M. Wang, Y. Liu, P. A. McCue, A. A. Quong, M. P. Lisanti, and R. G. Pestell (2010)
PNAS
107, 8231-8236
|Abstract »|Full Text »|PDF »
Human tRNA-derived small RNAs in the global regulation of RNA silencing.
D. Haussecker, Y. Huang, A. Lau, P. Parameswaran, A. Z. Fire, and M. A. Kay (2010)
RNA
16, 673-695
|Abstract »|Full Text »|PDF »
P0 proteins of European beet-infecting poleroviruses display variable RNA silencing suppression activity.
A. Kozlowska-Makulska, H. Guilley, M. S. Szyndel, M. Beuve, O. Lemaire, E. Herrbach, and S. Bouzoubaa (2010)
J. Gen. Virol.
91, 1082-1091
|Abstract »|Full Text »|PDF »
Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice.
J. Wang, X. Gao, L. Li, X. Shi, J. Zhang, and Z. Shi (2010)
J. Exp. Bot.
61, 1885-1895
|Abstract »|Full Text »|PDF »
MicroRNA-21 is upregulated during the proliferative phase of liver regeneration, targets Pellino-1, and inhibits NF-{kappa}B signaling.
R. T. Marquez, E. Wendlandt, C. S. Galle, K. Keck, and A. P. McCaffrey (2010)
Am J Physiol Gastrointest Liver Physiol
298, G535-G541
|Abstract »|Full Text »|PDF »
MicroRNA-10b Promotes Migration and Invasion through KLF4 in Human Esophageal Cancer Cell Lines.
Y. Tian, A. Luo, Y. Cai, Q. Su, F. Ding, H. Chen, and Z. Liu (2010)
J. Biol. Chem.
285, 7986-7994
|Abstract »|Full Text »|PDF »
Structure of the Arabidopsis thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction.
H. Qin, F. Chen, X. Huan, S. Machida, J. Song, and Y. A. Yuan (2010)
RNA
16, 474-481
|Abstract »|Full Text »|PDF »
MicroRNA-145 Suppresses Cell Invasion and Metastasis by Directly Targeting Mucin 1.
V. Olive, M. J. Bennett, J. C. Walker, C. Ma, I. Jiang, C. Cordon-Cardo, Q.-J. Li, S. W. Lowe, G. J. Hannon, and L. He (2009)
Genes & Dev.
23, 2839-2849
|Abstract »|Full Text »|PDF »
Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats.
J. H. Tuteja, G. Zabala, K. Varala, M. Hudson, and L. O. Vodkin (2009)
PLANT CELL
21, 3063-3077
|Abstract »|Full Text »|PDF »
Emerging roles of microRNAs as molecular switches in the integrated circuit of the cancer cell.
G. Sotiropoulou, G. Pampalakis, E. Lianidou, and Z. Mourelatos (2009)
RNA
15, 1443-1461
|Abstract »|Full Text »|PDF »
Bidirectional silencing of RNA polymerase I transcription by a strand switch region in Trypanosoma brucei.
S. Haenni, E. Studer, G. S. Burkard, and I. Roditi (2009)
Nucleic Acids Res.
37, 5007-5018
|Abstract »|Full Text »|PDF »
MicroRNAs and Their Role in Progressive Kidney Diseases.
M. Kato, L. Arce, and R. Natarajan (2009)
Clin. J. Am. Soc. Nephrol.
4, 1255-1266
|Abstract »|Full Text »|PDF »
Retroviral delivery of RNA interference against Marek's disease virus in vivo.
M. Chen, W. S. Payne, J. R. Dunn, S. Chang, H. M. Zhang, H. D. Hunt, and J. B. Dodgson (2009)
Poult. Sci.
88, 1373-1380
|Abstract »|Full Text »|PDF »
Telomeric RNAs Mark Sex Chromosomes in Stem Cells.
L.-F. Zhang, Y. Ogawa, J. Y. Ahn, S. H. Namekawa, S. S. Silva, and J. T. Lee (2009)
Genetics
182, 685-698
|Abstract »|Full Text »|PDF »
A partition function algorithm for interacting nucleic acid strands.
H. Chitsaz, R. Salari, S. C. Sahinalp, and R. Backofen (2009)
Bioinformatics
25, i365-i373
|Abstract »|Full Text »|PDF »
The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo.
J. T. Huse, C. Brennan, D. Hambardzumyan, B. Wee, J. Pena, S. H. Rouhanifard, C. Sohn-Lee, C. le Sage, R. Agami, T. Tuschl, et al. (2009)
Genes & Dev.
23, 1327-1337
|Abstract »|Full Text »|PDF »
Lowly Expressed Human MicroRNA Genes Evolve Rapidly.
Estradiol downregulates miR-21 expression and increases miR-21 target gene expression in MCF-7 breast cancer cells.
N. S. Wickramasinghe, T. T. Manavalan, S. M. Dougherty, K. A. Riggs, Y. Li, and C. M. Klinge (2009)
Nucleic Acids Res.
37, 2584-2595
|Abstract »|Full Text »|PDF »
Germline mutation of microRNA-125a is associated with breast cancer.
W Li, R Duan, F Kooy, S L Sherman, W Zhou, and P Jin (2009)
J. Med. Genet.
46, 358-360
|Abstract »|Full Text »|PDF »
Epigenetics: Connecting Environment and Genotype to Phenotype and Disease.
S. P. Barros and S. Offenbacher (2009)
Journal of Dental Research
88, 400-408
|Abstract »|PDF »
Increased RNAi is related to intracellular release of siRNA via a covalently attached signal peptide.
A. Detzer, M. Overhoff, W. Wunsche, M. Rompf, J. J. Turner, G. D. Ivanova, M. J. Gait, and G. Sczakiel (2009)
RNA
15, 627-636
|Abstract »|Full Text »|PDF »
Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas.
J. Y. Zhu, T. Pfuhl, N. Motsch, S. Barth, J. Nicholls, F. Grasser, and G. Meister (2009)
J. Virol.
83, 3333-3341
|Abstract »|Full Text »|PDF »
MicroRNA-21 Regulates the Proliferation and Invasion in Esophageal Squamous Cell Carcinoma.
Y. Hiyoshi, H. Kamohara, R. Karashima, N. Sato, Y. Imamura, Y. Nagai, N. Yoshida, E. Toyama, N. Hayashi, M. Watanabe, et al. (2009)
Clin. Cancer Res.
15, 1915-1922
|Abstract »|Full Text »|PDF »
p53 represses c-Myc through induction of the tumor suppressor miR-145.
M. Sachdeva, S. Zhu, F. Wu, H. Wu, V. Walia, S. Kumar, R. Elble, K. Watabe, and Y.-Y. Mo (2009)
PNAS
106, 3207-3212
|Abstract »|Full Text »|PDF »
MicroRNA target prediction by expression analysis of host genes.
V. A. Gennarino, M. Sardiello, R. Avellino, N. Meola, V. Maselli, S. Anand, L. Cutillo, A. Ballabio, and S. Banfi (2009)
Genome Res.
19, 481-490
|Abstract »|Full Text »|PDF »
MicroRNA-mediated Regulation of Ubc9 Expression in Cancer Cells.
F. Wu, S. Zhu, Y. Ding, W. T. Beck, and Y.-Y. Mo (2009)
Clin. Cancer Res.
15, 1550-1557
|Abstract »|Full Text »|PDF »
MicroRNA-298 and MicroRNA-328 Regulate Expression of Mouse {beta}-Amyloid Precursor Protein-converting Enzyme 1.
V. Boissonneault, I. Plante, S. Rivest, and P. Provost (2009)
J. Biol. Chem.
284, 1971-1981
|Abstract »|Full Text »|PDF »
HIV-1 Tat RNA silencing suppressor activity is conserved across kingdoms and counteracts translational repression of HIV-1.
S. Qian, X. Zhong, L. Yu, B. Ding, P. de Haan, and K. Boris-Lawrie (2009)
PNAS
106, 605-610
|Abstract »|Full Text »|PDF »
Identification of Protein Kinase D2 as a Pivotal Regulator of Endothelial Cell Proliferation, Migration, and Angiogenesis.
Q. Hao, L. Wang, Z. J. Zhao, and H. Tang (2009)
J. Biol. Chem.
284, 799-806
|Abstract »|Full Text »|PDF »
RNAi Experiments in Mouse Oocytes and Early Embryos.
C. Migliore, A. Petrelli, E. Ghiso, S. Corso, L. Capparuccia, A. Eramo, P. M. Comoglio, and S. Giordano (2008)
Cancer Res.
68, 10128-10136
|Abstract »|Full Text »|PDF »
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.
A. Busch, A. S. Richter, and R. Backofen (2008)
Bioinformatics
24, 2849-2856
|Abstract »|Full Text »|PDF »
Artificial MicroRNAs Highly Accessible to Targets Confer Efficient Virus Resistance in Plants.
C.-G. Duan, C.-H. Wang, R.-X. Fang, and H.-S. Guo (2008)
J. Virol.
82, 11084-11095
|Abstract »|Full Text »|PDF »
Site-specific crosslinking of human microRNPs to RNA targets.
Inducible expression of microRNA-194 is regulated by HNF-1{alpha} during intestinal epithelial cell differentiation.
K. Hino, K. Tsuchiya, T. Fukao, K. Kiga, R. Okamoto, T. Kanai, and M. Watanabe (2008)
RNA
14, 1433-1442
|Abstract »|Full Text »|PDF »
MicroRNA-210 Modulates Endothelial Cell Response to Hypoxia and Inhibits the Receptor Tyrosine Kinase Ligand Ephrin-A3.
P. Fasanaro, Y. D'Alessandra, V. Di Stefano, R. Melchionna, S. Romani, G. Pompilio, M. C. Capogrossi, and F. Martelli (2008)
J. Biol. Chem.
283, 15878-15883
|Abstract »|Full Text »|PDF »
A multifunctional human Argonaute2-specific monoclonal antibody.
S. Rudel, A. Flatley, L. Weinmann, E. Kremmer, and G. Meister (2008)
RNA
14, 1244-1253
|Abstract »|Full Text »|PDF »
Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10.
M. Kim, B. Patel, K. E. Schroeder, A. Raza, and J. Dejong (2008)
RNA
14, 1005-1011
|Abstract »|Full Text »|PDF »
Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer.
L. Zhang, S. Volinia, T. Bonome, G. A. Calin, J. Greshock, N. Yang, C.-G. Liu, A. Giannakakis, P. Alexiou, K. Hasegawa, et al. (2008)
PNAS
105, 7004-7009
|Abstract »|Full Text »|PDF »
Experimental validation of the importance of seed complement frequency to siRNA specificity.
E. M. Anderson, A. Birmingham, S. Baskerville, A. Reynolds, E. Maksimova, D. Leake, Y. Fedorov, J. Karpilow, and A. Khvorova (2008)
RNA
14, 853-861
|Abstract »|Full Text »|PDF »
R-Coffee: a method for multiple alignment of non-coding RNA.
A. Wilm, D. G. Higgins, and C. Notredame (2008)
Nucleic Acids Res.
36, e52
|Abstract »|Full Text »|PDF »
Diversification of the Core RNA Interference Machinery in Chlamydomonas reinhardtii and the Role of DCL1 in Transposon Silencing.
J. A. Casas-Mollano, J. Rohr, E.-J. Kim, E. Balassa, K. van Dijk, and H. Cerutti (2008)
Genetics
179, 69-81
|Abstract »|Full Text »|PDF »
Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila.
J. Lu, Y. Fu, S. Kumar, Y. Shen, K. Zeng, A. Xu, R. Carthew, and C.-I Wu (2008)
Mol. Biol. Evol.
25, 929-938
|Abstract »|Full Text »|PDF »
The growing catalog of small RNAs and their association with distinct Argonaute/Piwi family members.
T. A. Farazi, S. A. Juranek, and T. Tuschl (2008)
Development
135, 1201-1214
|Abstract »|Full Text »|PDF »
Characterization of Hypovirus-Derived Small RNAs Generated in the Chestnut Blight Fungus by an Inducible DCL-2-Dependent Pathway.
X. Zhang, G. C. Segers, Q. Sun, F. Deng, and D. L. Nuss (2008)
J. Virol.
82, 2613-2619
|Abstract »|Full Text »|PDF »
EBV MicroRNAs in Primary Lymphomas and Targeting of CXCL-11 by ebv-mir-BHRF1-3.
T. Xia, A. O'Hara, I. Araujo, J. Barreto, E. Carvalho, J. B. Sapucaia, J. C. Ramos, E. Luz, C. Pedroso, M. Manrique, et al. (2008)
Cancer Res.
68, 1436-1442
|Abstract »|Full Text »|PDF »
Putative promoter regions of miRNA genes involved in evolutionarily conserved regulatory systems among vertebrates.