Note to users. If you're seeing this message, it means that your browser cannot find this page's style/presentation instructions -- or possibly that you are using a browser that does not support current Web standards. Find out more about why this message is appearing, and what you can do to make your experience of our site the best it can be.
GoGreen Membership

Site Tools

  • AAAS
  • Subscribe
  • Feedback

Site Search

Search Advanced

Logo for

Science 309 (5740): 1527-1528

Copyright © 2005 by the American Association for the Advancement of Science

The Functional Genomics of Noncoding RNA

John S. Mattick

Abstract: Large numbers of noncoding RNA transcripts (ncRNAs) are being revealed by complementary DNA cloning and genome tiling array studies in animals. The big and as yet largely unanswered question is whether these transcripts are relevant. A paper by Willingham et al. shows the way forward by developing a strategy for large-scale functional screening of ncRNAs, involving small interfering RNA knockdowns in cell-based screens, which identified a previously unidentified ncRNA repressor of the transcription factor NFAT. It appears likely that ncRNAs constitute a critical hidden layer of gene regulation in complex organisms, the understanding of which requires new approaches in functional genomics.

Australian Research Council Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD 4072, Australia. E-mail: j.mattick{at}imb.uq.edu.au


THIS ARTICLE HAS BEEN CITED BY OTHER ARTICLES:
Growth arrest in human T-cells is controlled by the non-coding RNA growth-arrest-specific transcript 5 (GAS5).
M. Mourtada-Maarabouni, V. L. Hedge, L. Kirkham, F. Farzaneh, and G. T. Williams (2008)
J. Cell Sci. 121, 939-946
   Abstract »    Full Text »    PDF »
Origin of phenotypes: Genes and transcripts.
T. R. Gingeras (2007)
Genome Res. 17, 682-690
   Abstract »    Full Text »    PDF »
A new paradigm for developmental biology.
J. S. Mattick (2007)
J. Exp. Biol. 210, 1526-1547
   Abstract »    Full Text »    PDF »
Reassortment and Concerted Evolution in Banana Bunchy Top Virus Genomes.
J.-M. Hu, H.-C. Fu, C.-H. Lin, H.-J. Su, and H.-H. Yeh (2007)
J. Virol. 81, 1746-1761
   Abstract »    Full Text »    PDF »
RNAdb 2.0--an expanded database of mammalian non-coding RNAs.
K. C. Pang, S. Stephen, M. E. Dinger, P. G. Engstrom, B. Lenhard, and J. S. Mattick (2007)
Nucleic Acids Res. 35, D178-D182
   Abstract »    Full Text »    PDF »
Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum.
K. V. Prasanth and D. L. Spector (2007)
Genes & Dev. 21, 11-42
   Abstract »    Full Text »    PDF »
Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction.
O. T. P. Kim, K. Yura, and N. Go (2006)
Nucleic Acids Res.
   Abstract »    Full Text »    PDF »
A Novel Class of Developmentally Regulated Noncoding RNAs in Leishmania.
C. Dumas, C. Chow, M. Muller, and B. Papadopoulou (2006)
Eukaryot. Cell 5, 2033-2046
   Abstract »    Full Text »    PDF »
Exportin-5 orthologues are functionally divergent among species.
S. Shibata, M. Sasaki, T. Miki, A. Shimamoto, Y. Furuichi, J. Katahira, and Y. Yoneda (2006)
Nucleic Acids Res. 34, 4711-4721
   Abstract »    Full Text »    PDF »
The complexity of the mammalian transcriptome.
S. Gustincich, A. Sandelin, C. Plessy, S. Katayama, R. Simone, D. Lazarevic, Y. Hayashizaki, and P. Carninci (2006)
J. Physiol. 575, 321-332
   Abstract »    Full Text »    PDF »
Non-coding RNA..
J. S. Mattick and I. V. Makunin (2006)
Hum. Mol. Genet. 15, R17-R29
   Abstract »    Full Text »    PDF »
A noncoding RNA is a potential marker of cell fate during mammary gland development.
M. R. Ginger, A. N. Shore, A. Contreras, M. Rijnkels, J. Miller, M. F. Gonzalez-Rimbau, and J. M. Rosen (2006)
PNAS 103, 5781-5786
   Abstract »    Full Text »    PDF »
The positive aspects of stress: strain initiates domain decondensation (SIDD).
S. Winkelmann, M. Klar, C. Benham, A. Prashanth, S. Goetze, A. Gluch, and J. Bode (2006)
Brief Funct Genomic Proteomic 5, 24-31
   Abstract »    Full Text »    PDF »
Experimental approaches to identify non-coding RNAs.
A. Huttenhofer and J. Vogel (2006)
Nucleic Acids Res. 34, 635-646
   Abstract »    Full Text »    PDF »
MicroRNA enrichment among short 'ultraconserved' sequences in insects..
T. Tran, P. Havlak, and J. Miller (2006)
Nucleic Acids Res. 34, e65
   Abstract »    Full Text »    PDF »
RNomics: Identification and Function of Small Non-Protein-coding RNAs in Model Organisms.
A. HUTTENHOFER (2006)
Cold Spring Harb Symp Quant Biol 71, 135-140
   Abstract »    PDF »

ADVERTISEMENT
Click Me!

ADVERTISEMENT
Click Me!

To Advertise     Find Products


Science Signaling. ISSN 1937-9145 (pre-2008: Science's STKE. ISSN 1525-8882)