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Differential Targeting of Gß-Subunit Signaling with Small Molecules
Tabetha M. Bonacci,1
Jennifer L. Mathews,1
Chujun Yuan,2
David M. Lehmann,1
Sundeep Malik,1
Dianqing Wu,3
Jose L. Font,1
Jean M. Bidlack,1
Alan V. Smrcka1,2*
Abstract:
G protein ß subunits have potential as a target fortherapeutic treatment of a number of diseases. We performedvirtual docking of a small-molecule library to a site on Gßsubunits that mediates protein interactions. We hypothesizedthat differential targeting of this surface could allow forselective modulation of Gß subunit functions. Severalcompounds bound to Gß subunits with affinities from0.1 to 60 µM and selectively modulated functional Gß-protein-proteininteractions in vitro, chemotactic peptide signaling pathwaysin HL-60 leukocytes, and opioid receptordependent analgesiain vivo. These data demonstrate an approach for modulation ofG proteincoupled receptor signaling that may representan important therapeutic strategy.
1 Department of Pharmacology and Physiology, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA. 2 Department of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA. 3 Department of Genetics and Developmental Biology, University of Connecticut Health Center, Farmington, CT 06030, USA.
* To whom correspondence should be addressed. E-mail: Alan_Smrcka{at}URMC.rochester.edu
The ß subunits of heterotrimeric guanine nucleotidebinding proteins (G proteins) are released upon ligand activationof G proteincoupled receptors (GPCRs). Free Gßsubunits bind and regulate multiple target proteins within thecellincluding phospholipase C (PLC) ß2 andPLC ß3, phosphoinositide 3 kinase (PI3K) , adenylylcyclase, N-type Ca2+ channels, and inwardly rectifying K+ channelsandmediate physiological processes such as neutrophil chemotaxis,vascular cell proliferation, and cardiac chronotropy (1, 2).
To investigate the molecular nature of Gß-target recognition,we screened random-peptide phage display libraries for bindingto Gß12 and identified a series of peptides that boundto a single preferred protein-protein interaction surface ("hotspot")on Gß (3). One of the peptides (SIRK) blocked Gß-dependentregulation of PLCß2 and PI3K but not regulation oftype I adenylyl cyclase or N-type Ca2+ channels, thus demonstratingthe potential for selective targeting of Gß signaling.The crystal structure of Gß12 in a complex with aSIRK peptide derivative (SIGK) reveals the preferred interactionsurface as a region overlapping the G-switch II domain bindingsurface on top of the Gß propeller (46). Subclassesof peptides appeared to bind distinct subsurfaces of the hotspotand differentially affect G protein subunit interactions. ManyGß effectors also use diverse mechanisms for bindingwithin this surface (7, 8), and because peptides showed someselectivity, we hypothesized that small organic molecules alsomight selectively modulate Gß-target interactions.
We used FlexX virtual screening software (9) in the Sybyl molecularmodeling package to dock 1990 compounds in the chemical diversityset from the National Cancer Institute (NCI) to the interactionhotspot of Gß12. The diversity library was designedto contain chemical core structures representative of the larger250,251-compound library from NCI. The docked models were rankedusing five scoring functions in C-Score: D-score, G-score, F-score,Chemscore, and PMF-score (10). Two consensus scores that equallyweight the five scoring functions were also used to rank thecompounds. The top 1% of compounds from each scoring function(85 compounds total) were tested for their ability to competewith phage-displaying SIGK for binding to biotinylated Gß12(bGß12) in an enzyme-linked immunosorbent assay (ELISA)(3). Nine of the 85 compounds inhibited SIGK binding with medianinhibitory concentration (IC50) values ranging from 100 nM to60 µM (Fig. 1B and table S1).
Fig. 1.. Small molecule binding to the hotspot on Gß. (A) Structure of SIGK bound to Gß at the hotspot. Amino acids within 6.5 Å of SIGK were targeted with the FlexX module of Sybyl virtual docking software. (B) Competition ELISA data for three of the compounds identified in the virtual screen. Compounds were tested for their ability to inhibit binding of a phage displaying the peptide SIGKAFKILGYPDYD (3, 4). M119 (NSC119910) (squares); M109 (NSC109208) (triangles); M117 (NSC117079) (circles). Data for all the binding compounds are summarized in table S1. (C) Structures of representative ß-binding compounds. (D) Competition of M119 for interactions between Gi1 and Gß12. F-i1 and M119 were simultaneously added to bGß12 immobilized on streptavidin beads. The amount of bead-based fluorescence was assessed by flow cytometry as described (11, 12).
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One compound, M119, with a high apparent affinity for bGß12(ELISA IC50 = 200 nM) (Fig. 1, B and C, and table S1) was selectedas a lead to define structure-activity requirements (SAR) forbinding to Gß12. Twenty-one compounds from the NCIlibrary with similar structures to M119 were tested for relativeGß12 binding affinities (Fig. 1C and table S2). Forexample, the apparent affinity of M119B for bGß12is that of M119, with the key chemical difference being the loss of two hydroxyl groups.Thus, specific chemical characteristics may be required forinteractions with the Gß hot-spot. We next testedwhether M119 could disrupt protein interactions with a bonafide Gß binding partner, Gi1. The hotspot for proteininteraction overlaps with the G switch II binding surface onGß. The overall Gi1-ß interaction surfacespans 1800 Å2 (5, 6), and the dissociation constant (Kd)for Gi1 binding to Gß is 1 nM (11). M119 competedwith fluorescein isothiocyanate (FITC)i1 (Fi) for bindingto bGß12 with an IC50 value of 400 nM (Fig. 1D). However,unlike SIGK and related peptides that bind to this surface (12),M119 did not promote dissociation of Gi from Gß (fig.S1).
FlexX docking software predicted that compounds M201 and M119(Fig. 1C) bound to distinct subsurfaces in the hotspot, butM201 did not compete for SIGK binding. Nevertheless, we testedM119 and M201 in in vitro reconstitution assays of Gß-dependentactivation of PLCß2, PLCß3, and PI3K andbinding to GRK2. M119 attenuated Gß12-dependent activationof PLCß2 (IC50 value of 3 µM), PLCß3,and PI3K (Fig. 2, A to C, left panels). M201, on the other hand,did not affect PLCß2 activation by Gß12but potentiated Gß12-dependent activation of bothPLCß3 and PI3K (Fig. 2, A to C, right panels). M119also inhibited direct binding of bGß12 to PLCß2and PLCß3, whereas M201 did not block binding of PLCß2and enhanced binding of PLCß3 to Gß12 (fig.S2). M119 and M201 both inhibited GRK2 binding to bGß12with similar IC50 values of approximately 5 µM (Fig. 2D).A weakly binding compound M119B (Fig. 1C and table S2) did nothave effects in these assays (fig. S3). These data suggest thatboth M201 and M119 bind to Gß but differentially modulateGß interactions with effectors. These are only twoof multiple diverse compounds identified, which suggests thepotential for multiple modes of Gß-dependent targetmodulation by these small molecules.
Fig. 2.. Differential effects of M119 and M201 on ß-dependent regulation of downstream targets. (A) Effects of M119 and M201 (NSC201400) on Gß-activation of PLCß. Purified PLCß2 (0.25 ng) was assayed in the presence (triangles) or absence (squares) of 100 nM purified Gß12. (B) Effects of M119 and M201 effects on purified PLCß3 (0.5 ng) activity in the presence (triangles) or absence (squares) of 100 nM purified Gß12. (C) Effects of M119 and M201 on activation of PI3K by Gß12. Assays contained 10 ng of purified p101/p110 PI3K heterodimer with or without 100 nM purified Gß12. Left,: (triangles) 100 nM Gß12 or (squares) no ß. (D) Effects of M119 and M201 on Gß-GRK2 interactions. M119 or M201 and 25 nM purified GRK2 were added simultaneously to 250 nM bGß12 immobilized on streptavidin agarose. Associated GRK2 was detected with antibody to GRK2. Data are representative experiments [mean ± SEM, except (D)] and were repeated at least three times each. The concentrations of compound required for these assays are apparently higher than predicted by the phage ELISA assays, but may reflect the different assay conditions and protein concentrations required for each assay.
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To test the effects of differentially targeting Gßon GPCR signaling in intact cells, M119 (and a similar compound,M158C) (Fig. 1C and table S2) and M201 were tested for theirability to modulate fMLP receptordependent signalingin differentiated HL-60 leukocytes. The fMLP receptor couplesto Gi in these cells and activates PLCß2 (PLCß3is a minor isoform in these cells), PI3K, and ERK through Gßsignaling (13, 14). Pretreatment of differentiated HL-60 cellswith M119 and M158C (Fig. 3A and fig. S4A), but not M201 (Fig. 3Band fig. S4B), attenuated fMLP-induced Ca2+ increases. M119had no effect on carbachol-dependent increases in Ca2+ in HEK293cells stably expressing the Gq-linked M3-muscarinic receptor,confirming a specific effect of M119 on Gß-dependentCa2+ mobilization (fig. S4C). fMLP-dependent GRK2 translocationto the membrane fraction of HL-60 cells, on the other hand,was substantially inhibited by incubation with either M119 orM201 (Fig. 3C). Thus, M119 and M201 differentially modulatePLCß2 regulation by Gß, yet both inhibitGRK2 binding in intact cells.
Fig. 3.. Effects of M119 and related compounds on Gß signaling in dimethyl sulfoxide (DMSO)differentiated HL-60 cells. (A) M119 and related compounds block fMLP-dependent Ca2+ release in differentiated HL-60 cells, loaded with 1 µM Fura2-AM. Cells were pretreated with DMSO or 10 µM compounds for 5 min before stimulation with 250 nM fMLP. The change in fluorescence was monitored at 340/380 nm. Data are representative of five independent experiments. Compounds are significantly different than DMSO control, P < 0.01. See fig. S4A for dose dependence. (B) Same as A except 10 µM M201 was tested. Data are representative of four independent experiments. See fig. S4B for pooled data. (C) M119 and M201 inhibition of GRK2 translocation. Differentiated HL-60 cells were treated with 10 µM compound before stimulation with 250 nM fMLP. Translocation of endogenous GRK2 was determined by Western blotting with a GRK2 antibody and quantitative chemiluminescence. Data are mean ± SEM from five experiments, *P < 0.05, **P < 0.01 analysis of variance (ANOVA). (D) M119 and M158C (NSC158110) inhibition of GFP-PHAkt translocation. Differentiated HL-60 cells stably overexpressing GFP-PHAkt were treated with 10 µM compound before stimulation with 100 nM fMLP. Translocation of GFP-PHAkt to the membrane was determined by Western blotting with antibody to GFP and quantitative chemiluminescence. Data are mean ± SEM from four experiments. ***P < 0.001 ANOVA. (E) Lack of effect of M119, M158C, and M201 on fMLP-induced ERK1 and ERK2 activation. Differentiated HL-60 cells were pretreated with 10 µM of compound prior to stimulation with 1 µM fMLP for 5 min. Levels of phosphorylated and total ERK were determined by Western blotting. This experiment was repeated three times with similar results.
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To assess the ability of M119 and M158C to inhibit fMLP receptordependentregulation of PI3K activation, we stimulated HL-60 cells stablyoverexpressing a green fluorescent protein (GFP)taggedpleckstrin homology (PH) domain from Akt (15) with fMLP andassessed translocation of the GFP-PHAkt to the membrane by subcellularfractionation and Western blotting. The PH domain from Akt bindsto PIP3 produced by PI3K activity at the membrane. Pretreatmentof the cells with 10 µM of M119 or M158C inhibited fMLP-dependenttranslocation of GFP-PHAkt to the membrane (Fig. 3D), consistentwith the ability of these compounds to inhibit activation ofPI3K by Gß.
Stimulation of differentiated HL-60 cells with fMLP also resultsin pertussis toxinsensitive activation of various MAPkinases, including ERK1 and ERK2, p38, and JNK (16). However,pretreatment of HL-60 cells with M119, M158C, and M201 did notblock fMLP-induced activation of ERK1 and ERK2 (Fig. 3E). Ca2+mobilization occurred at low fMLP (100 nM) concentrations relativeto that required to observe ERK1 and ERK2 (1 µM) activation,indicating that the selective lack of effect of M119 on ERKactivation is not due to excess G protein activation.
We tested the efficacy of our compounds in an in vivo model.Compared with wild-type animals, PLCß3/mice are 10 times as sensitive to the antinociceptive effectsof the µ-agonist morphine (17). Because M119 blocks Gß-dependentactivation of PLCß3, we tested whether coadministrationof M119 with morphine would also increase morphine-induced antinociception.Coadministration of M119 with morphine intra cerebroventricularlyresulted in an 11-fold increase in the analgesic potency ofmorphine (Fig. 4A) [ED50 values and 95% confidence limits: 0.069(0.023 to 0.201) nmol and 0.743 (0.341 to 1.62) nmol, respectively],whereas administration of 100 nmol M119 alone had no effecton baseline antinociception (table S3). M119 also had no effecton morphine-dependent antinociception in PLCß3/mice (Fig. 4B). These data highlight the specificity of M119actions and the selective nature of M119 both in vitro and invivo. Gß subunits regulate many aspects of signalingcritical for the actions of opioid agonists (18). If M119 wereglobally blocking Gß subunit functions, we expectthat morphine-induced antinociception would have been attenuatedrather than potentiated with M119 coadministration.
Fig. 4.. M119 effects on morphine-induced antinociception in (A) wild-type and (B) PLCß3/ mice. Increasing concentrations of morphine were administered intra-cerebroventricularly to mice with (squares) or without (triangles) concomitant administration of 100 nmol M119. Antinociception was measured 20 min after injection using the 55°C tail-flick test. Data are mean ± SEM from 7 to 10 animals at each point.
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Protein interaction interfaces present difficult drug targetsbecause of the generally large interaction surface area andflat topology of the interaction surfaces. Hotspots at proteininterfaces comprise a small fraction of the overall interactionsurface, yet are responsible for most of the energetics of binding,and it has been proposed that targeting such surfaces couldsuccessfully disrupt protein-protein binding (19). As a resultof extensive screening, some protein interaction interfaceshave been targeted with small molecules (1921). Our screenof only 1990 molecules identified multiple compounds with apparentaffinities in the high nM to low µM range. These moleculesdemonstrate that multiple small molecule binders of Gßcould be developed that differentially modulate functions downstreamof GPCRs. Numerous studies in animal models have implicatedGß-subunit targeting as a therapeutic strategy indiseases such as heart failure (22), prostate cancer (23), vasculardisease (24), and inflammatory disease (13). Thus, more extensivescreening for molecules that bind to the Gß hotspotwill yield a repertoire of potentially therapeutically usefulsmall molecules.
G. Iaccarino, L. A. Smithwick, R. J. Lefkowitz, W. J. Koch, Proc. Natl. Acad. Sci. U.S.A.96, 3945 (1999).[Abstract/Free Full Text]
We thank the Developmental Therapeutics Program at the NCI/NIH for providing the compounds used in this study, J. Benovic for providing purified GRK2, H. Bourne for providing HL-60 cells stably overexpressing GFP-PHAkt, and S. Sprang for evaluation of this manuscript. Supported by NIH grants GM60286 (A.V.S.), K05-DA00360 (J.M.B.), HL080706 (D.W.), Predoctoral Training grant in Cardiovascular Biology HL-T3207949 (T.M.B.), and NIDA Drug Abuse Training grant T32DA07232 (J.L.M.).
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