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Patched1 Regulates Hedgehog Signaling at the Primary Cilium
Rajat Rohatgi,1,2*
Ljiljana Milenkovic,1*
Matthew P. Scott1
Abstract:
Primary cilia are essential for transduction of the Hedgehog(Hh) signal in mammals. We investigated the role of primarycilia in regulation of Patched1 (Ptc1), the receptor for SonicHedgehog (Shh). Ptc1 localized to cilia and inhibited Smoothened(Smo) by preventing its accumulation within cilia. When Shhbound to Ptc1, Ptc1 left the cilia, leading to accumulationof Smo and activation of signaling. Thus, primary cilia senseShh and transduce signals that play critical roles in development,carcinogenesis, and stem cell function.
1 Departments of Developmental Biology, Genetics, and Bioengineering and Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA. 2 Department of Oncology, Stanford University School of Medicine, Stanford, CA 94305, USA.
* These authors contributed equally to this work.
To whom correspondence should be addressed. E-mail: mscott{at}stanford.edu
The Hedgehog (Hh) signaling pathway plays an important roleboth in embryonic development and in adult stem cell function(1, 2). Dysregulation of the pathway causes birth defects andhuman cancer (2). Despite the importance of Hh signaling inmammals, there are gaps in our understanding of early eventsin this pathway. In the absence of signal, the transmembraneprotein Patched1 (Ptc1) keeps the pathway turned off by inhibitingthe function of a second transmembrane protein, Smoothened (Smo).The secreted protein Sonic Hedgehog (Shh) binds and inactivatesPtc1, allowing activation of Smo. Smo then triggers target genetranscription through the Gli family of transcription factors.The mechanism by which Shh inhibits Ptc1 and Ptc1 inhibits Smois not understood in mammals.
In Drosophila, Ptc inhibits the movement of Smo to the plasmamembrane. Binding of Hh causes the internalization of Ptc fromthe plasma membrane to vesicles, allowing Smo to translocateto the plasma membrane and activate downstream signaling (3,4). The discovery that protein components of primary cilia arerequired for Hh signaling suggested that subcellular localizationhas an important role in mammalian Hh signaling (5). Primarycilia are cell surface projections found on most vertebratecells that function as sensory "antennae" for signals (6). Severalcomponents of the Hh pathway, including Smo and the Gli proteins,accumulate in primary cilia, and Smo is enriched in cilia uponstimulation with Shh (7, 8).
We examined the dynamic subcellular localization of Ptc1 andSmo in mammalian cells with the use of novel antibodies to thetwo proteins (fig. S1). These antibodies allowed detection ofendogenous Ptc1 and Smo in cultured mouse fibroblasts (NIH 3T3cells) and mouse embryonic fibroblasts (MEFs), two Hh-responsivecell types (9). Hh signaling was activated in NIH 3T3 cellsby treatment with either Shh or SAG (Shh-agonist), a small moleculethat directly binds and activates Smo (10). Because ptc1 isitself a transcriptional target of Hh signaling, increases inPtc1 protein levels can serve as a metric for pathway activation.Ptc1 protein levels began to rise by 4 hours and continued toincrease until 24 hours after addition of Shh (Fig. 1A). Afterstimulation of cells with Shh or SAG, endogenous Smo was enrichedin primary cilia (Fig. 1B). The mean fluorescence intensityof Smo in cilia began to increase as early as 1 hour after stimulationof cells with Shh or SAG (Fig. 1C and fig. S2). This likelyrepresented relocalization from a cytoplasmic pool, becausethe total amount of Smo protein did not increase at this timepoint (Fig. 1A).
Fig. 1.. Rapid localization of Smo in primary cilia after activation of the Hh pathway and regulation by Ptc1. (A) Immunoblots with antibodies to Ptc1, Smo, and actin were used to assess amounts of endogenous proteins in extracts from NIH 3T3 cells treated with Shh or SAG (100 nM). (B) Enrichment of Smo in primary cilia of NIH 3T3 cells left untreated (control) or treated with Shh or SAG (100 nM) for 24 hours. (C) Mean intensity of Smo fluorescence in cilia of NIH 3T3 cells treated with Shh or SAG (100 nM). Each point shows the mean ± SEM of fluorescence from 10 to 20 cilia. (D and E) Constitutive presence of Smo in the cilia of unstimulated ptc1–/– MEFs and reversal by retrovirally transduced Ptc1-YFP. In (B) and (D), confocal images of the ciliary marker acetylated tubulin (red) and Smo (green) were detected by immunofluorescence; nuclei (blue) were stained with 4',6'-diamidino-2-phenylindole (DAPI).
[View Larger Version of this Image (75K GIF file)]
To determine whether Ptc1 regulates the localization of Smo,we examined Smo localization in MEFs from ptc1–/–mice (9). These cells showed constitutive activation of Hh targetgene transcription (fig. S3). Consistent with a role of Ptc1in regulating Smo trafficking, Smo was constitutively localizedto primary cilia in these cells even in the absence of Shh orSAG (Fig. 1, D and E). Reintroduction of Ptc1 into these cellsby means of a retrovirus suppressed Hh-pathway activity (fig.S3) and prevented Smo accumulation in primary cilia (Fig. 1, D and E).Thus, the regulation of Smo localization by Ptc1 is conservedfrom flies to mammals.
To understand how Ptc1 may regulate entry of Smo into the cilium,we examined the localization of Ptc1 in MEFs and mouseembryos.Endogenous Ptc1 was present in small amounts in MEFs, near thelimit of detection by immunofluorescence. We therefore increasedthe amounts of Ptc1 protein by stimulating cells with SAG. Underthese conditions, Ptc1 was highly enriched in primary cilia(Fig. 2A). The ciliary localization of Ptc1 was confirmed inthree additional ways. First, Ptc1 fused to yellow fluorescentprotein (Ptc1-YFP) was found around the base and in the shaftof cilia in unstimulated ptc1–/– cells infectedwith a retrovirus encoding Ptc1-YFP (Figs. 2B and fig. S12).Second, Ptc1-YFP overproduced in ptc1–/– cells bytransfection showed clear ciliary localization in both liveand fixed cells (Fig. 3A and figs. S10 and S14). Third and mostimportant, endogenous Ptc1 was found in the cilia of mouse embryomesoderm cells responsive to Shh (Fig. 2D and figs. S4 and S5)(1).
Fig. 2.. Localization of Ptc1 in primary cilia. (A) Concentration of endogenous Ptc1 in cilia of NIH 3T3 cells stimulated with 100 nM SAG. (B) Localization of Ptc1-YFP in ptc1–/– MEFs infected with a retrovirus carrying an empty vector or the ptc1-YFP coding sequence. In (A) and (B), cilia (red) and Ptc1 (green) were visualized by immunofluorescence; nuclei (blue) were stained with DAPI. (C) Ptc1 staining in Shh-responsive cells of the neural tube (nt), notochord (nc), floor plate (fp), and paraxial mesoderm (m). Cross sections of wild-type (top row) or control ptc1–/– (bottom row) mouse embryos (E9.5) were imaged with a 40x objective. (D) Asymmetric, ciliary localization of Ptc1 in paraxial mesoderm cells. The cell boxed in white is magnified in the bottom panel; arrows indicate Ptc1 staining (red) around the base and in the shaft of cilia (green).
[View Larger Version of this Image (80K GIF file)]
Fig. 3.. Interactions between Shh and Ptc1 at primary cilia. (A) Colocalization of Shh and Ptc1 at the cilium shown in a confocal image of a live ptc1–/– cell transfected with Ptc1-YFP (green) and incubated with ShhN-A594 (red, 300 ng/ml) for 45 min. Inversin-CFP (cyan) marks the cilium, the dotted line demarcates the cell border, and insets show magnified views of the cilia. (B) Mean Ptc1 fluorescence in cilia of NIH 3T3 cells treated with SAG (100 nM), Shh, or both. (C) Disappearance of Ptc1 from primary cilia after Shh treatment. NIH 3T3 cells preincubated with SAG for 24 hours were switched to control medium (untreated) or into Shh-containing medium. The red dashed baseline shows the amount of ciliary Ptc1 in cells treated with Shh for 4 hours without a 24-hour SAG pulse.
[View Larger Version of this Image (42K GIF file)]
Ptc1 staining in cross sections of embryonic day 9.5 (E9.5)embryos was detected in cells of the ventral neural tube, notochord,splanchnic mesoderm, and paraxial mesoderm, precisely the regionswhere Hh signaling is known to be active and Shh target genessuch as ptc1 are highly expressed (Fig. 2C and fig. S4B) (1).We focused on mesoderm cells because they are likely the cellsthat gave rise to the MEFs that we have analyzed in culture.Endogenous Ptc1 showed asymmetric localization to a domain surroundingthe base of the cilium and in particles along the shaft of thecilium (Fig. 2D and figs. S4C and S5). This localization patternaround the base and in a particulate pattern along the shaftof the cilium is similar to that seen in cultured fibroblasts(compare Fig. 2D and fig. S12). In embryo cells, there was morevariability in the amount of Ptc1 in the shaft of cilia, a findinglikely related to differences in the amount of Shh signal receivedby cells in the complex milieu of embryonic tissue. The concentrationof Ptc1 at the base of primary cilia suggests a mechanism forhow it may inhibit Smo activation. Transport of proteins inand out of primary cilia is thought to be regulated at theirbase, and Ptc1 could function at this location to inhibit aprotein-trafficking step critical for Smo activation (11).
Shh could inactivate Ptc1 by binding to it at the cilium andinducing its internalization, degradation, or movement to otherregions of the plasma membrane. To determine whether Ptc1 atthe cilium can bind to Shh, we produced a fluorescently labeledversion of the N-terminal signaling fragment of Shh (ShhN-A594).Minute amounts of ShhN-A594, one-hundredth of those requiredto activate signaling, were added to live ptc1–/–cells transfected with Ptc1-YFP and a marker for cilia, inversinfused to cyan fluorescent protein (inversin-CFP) (12). Livecells were used because the interaction between Shh and Ptc1does not survive fixation. ShhN-A594 concentrated at cilia containingPtc1-YFP and colocalized with puncta of Ptc1-YFP (Fig. 3A andfig. S7). Ptc1–/– cells expressing inversin-CFPalone did not bind ShhN-A594, and an excess of unlabeled ShhNprevented binding of ShhN-A594 (fig. S7).
We next asked whether the interaction of Shh with Ptc1 influencesthe localization of Ptc1. Ptc1 was concentrated at cilia aftertreatment of cells with SAG alone but not after treatment withShh or a combination of Shh and SAG (Fig. 3B). This suggestedthat Shh binding might trigger the removal of the Ptc1-Shh complexfrom the cilium, or that new Ptc1 produced in response to Shhwas not localized in the cilium. To distinguish these possibilities,we induced the production of large amounts of Ptc1 in the ciliaof NIH 3T3 cells with SAG treatment and then switched the cellsto control medium or medium containing Shh (Fig. 3C). Ptc1 levelsin the cilium remained stable in the control, but Shh treatmentcaused a time-dependent disappearance of Ptc1 from the primarycilium (Fig. 3C and fig. S8). The loss of Ptc1 from cilia wasnot associated with a decrease in total Ptc1 protein levels(fig. S11) and thus implied movement of Ptc1 from cilia to anotherlocation in the cell. This delocalization was only evident withthe endogenous protein and not upon examination of transfectedPtc1-YFP, a far more abundant protein (fig. S7B).
We measured Ptc1 and Smo localization (Figs. 1 and 3) in thesame experiment. Because the localization changes for Ptc1 andSmo described above were each seen in >80% of the cilia visualized,the levels of Ptc1 and Smo in cilia were inversely correlated.The reciprocal time courses of Ptc1 disappearance and Smo appearanceat cilia after Shh addition (Figs. 1C and 3C) support a modelin which Shh triggers the removal of Ptc1 from the cilium, allowingSmo to enter and activate signaling. Consistent with this idea,cells of the ventral neural tube and floor plate, which receivelarge amounts of Shh, showed high levels of Smo and low levelsof Ptc1 in cilia (fig. S13). The movement of Ptc1 and Smo atthe cilium is analogous to the situation in Drosophila, wherepathway activation is associated with Smo movement to the plasmamembrane and movement of Ptc away (3).
Ptc1 may regulate Smo localization through a small molecule(13). Because Smo translocation to the primary cilium appearsto be a critical step in its activation, a regulatory smallmolecule would be predicted to control this step. Naturallyoccurring oxysterols are good candidates for endogenous smallmolecules that regulate Smo function. Cellular sterol concentrationsare important determinants of a cell's responsiveness to Shh,and oxysterols can activate Hh signaling (14–16). Whenwe treated NIH 3T3 cells with activating concentrations of theoxysterol 20-hydroxycholesterol, Smo rapidly translocated tothe primary cilium with kinetics that were identical to thoseseen in cells treated with SAG or Shh (Fig. 4, A and B, andfig. S9). Treatment with 7-hydroxycholesterol, an oxysterolthat does not activate the Hh pathway, did not induce translocationof Smo. This result provides a specific molecular mechanism—Smotranslocation to cilia—to explain how oxysterols regulateHh signaling.
Fig. 4.. Accumulation of Smo and Ptc1 at cilia of NIH 3T3 cells exposed to 20-hydroxycholesterol. (A and C) Localization of cilia (red) and Smo or Ptc1 (green) in cells treated with 10 µM 20-hydroxycholesterol or 7-hydroxycholesterol for 24 hours. (B) Time course of Smo accumulation at the primary cilium in NIH 3T3 cells treated with 20-hydroxycholesterol. (D) Increase in Ptc1 fluorescence in primary cilia after treatment with 20-hydroxycholesterol. In (B) and (D), each point shows the mean ± SEM of fluorescence from 10 to 20 cilia.
[View Larger Version of this Image (90K GIF file)]
Cells treated with 20-hydroxycholesterol also retained Ptc1in cilia in a pattern similar to that seen in cells treatedwith SAG (Fig. 4, C and D). Thus, oxysterols appear to functionnot like Shh, by causing the removal of Ptc1 from cilia, butat a more downstream step to make Smo insensitive to the inhibitoryeffects of Ptc1. However, oxysterols function differently fromSAG because they likely do not directly bind to Smo (16).
Our results suggest that Ptc1 localization to primary ciliainhibits the Hh pathway by excluding Smo and also allows ciliato function as chemosensors for the detection of extracellularShh. Binding of Shh to Ptc1 at primary cilia is coupled to pathwayactivation by the reciprocal movement of Ptc1 out of the ciliaand Smo into the cilia, a process that may be mediated by oxysterols.Elucidating the molecular machinery that controls Ptc1 and Smotrafficking at primary cilia will likely provide new targetsfor modulation of this important pathway.
M.P.S. is an investigator of the Howard Hughes Medical Institute and is supported by National Cancer Institute grant R01 CA088060. R.R. is a Robert Black Fellow of the Damon Runyon Cancer Research Fund (DRG 103-06). We thank R. Corcoran for discussions of oxysterol effects, P. Beachy for smo-/- cells and for sharing results before publication, J. Chen for SAG, O. Brandman for image analysis advice, J. Hyman for microscopy advice, R. Johnson and K. Suyama for Ptc1 antiserum, H. Hamada for inversin constructs, D. Ko for the Ptc1-YFP construct, A. Salic for the Shh labeling strategy, and T. Hillman, C. Ho, A. Kumar, and A. Balmain for comments.
Received for publication 9 January 2007. Accepted for publication 30 May 2007.
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|Abstract »|Full Text »|PDF »
A primary cilia-dependent etiology for midline facial disorders.
S. A. Brugmann, N. C. Allen, A. W. James, Z. Mekonnen, E. Madan, and J. A. Helms (2010)
Hum. Mol. Genet.
19, 1577-1592
|Abstract »|Full Text »|PDF »
Kinetics of Hedgehog-Dependent Full-Length Gli3 Accumulation in Primary Cilia and Subsequent Degradation.
X. Wen, C. K. Lai, M. Evangelista, J.-A. Hongo, F. J. de Sauvage, and S. J. Scales (2010)
Mol. Cell. Biol.
30, 1910-1922
|Abstract »|Full Text »|PDF »
Not Lost in Space: Trafficking in the Hedgehog Signaling Pathway.
Patched regulates Smoothened trafficking using lipoprotein-derived lipids.
H. Khaliullina, D. Panakova, C. Eugster, F. Riedel, M. Carvalho, and S. Eaton (2009)
Development
136, 4111-4121
|Abstract »|Full Text »|PDF »
A mouse model for Meckel syndrome reveals Mks1 is required for ciliogenesis and Hedgehog signaling.
S. D. Weatherbee, L. A. Niswander, and K. V. Anderson (2009)
Hum. Mol. Genet.
18, 4565-4575
|Abstract »|Full Text »|PDF »
Cystin, Cilia, and Cysts: Unraveling Trafficking Determinants.
T. W. Hurd and B. Margolis (2009)
J. Am. Soc. Nephrol.
20, 2485-2486
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The Rfx4 Transcription Factor Modulates Shh Signaling by Regional Control of Ciliogenesis.
A. M. Ashique, Y. Choe, M. Karlen, S. R. May, K. Phamluong, M. J. Solloway, J. Ericson, and A. S. Peterson (2009)
Science Signaling
2, ra70
|Abstract »|Full Text »|PDF »
Lateral transport of Smoothened from the plasma membrane to the membrane of the cilium.
L. Milenkovic, M. P. Scott, and R. Rohatgi (2009)
J. Cell Biol.
187, 365-374
|Abstract »|Full Text »|PDF »
The subependymal zone neurogenic niche: a beating heart in the centre of the brain: How plastic is adult neurogenesis? Opportunities for therapy and questions to be addressed.
Regulation of primary cilia formation by ceramide.
G. Wang, K. Krishnamurthy, and E. Bieberich (2009)
J. Lipid Res.
50, 2103-2110
|Abstract »|Full Text »|PDF »
Negative Regulation of Hedgehog Signaling by Liver X Receptors.
W.-K. Kim, V. Meliton, K. W. Park, C. Hong, P. Tontonoz, P. Niewiadomski, J. A. Waschek, S. Tetradis, and F. Parhami (2009)
Mol. Endocrinol.
23, 1532-1543
|Abstract »|Full Text »|PDF »
Dampened Hedgehog signaling but normal Wnt signaling in zebrafish without cilia.
The primary cilium coordinates early cardiogenesis and hedgehog signaling in cardiomyocyte differentiation.
C. A. Clement, S. G. Kristensen, K. Mollgard, G. J. Pazour, B. K. Yoder, L. A. Larsen, and S. T. Christensen (2009)
J. Cell Sci.
122, 3070-3082
|Abstract »|Full Text »|PDF »
Planar Cell Polarity Signaling: The Developing Cell's Compass.
E. K. Vladar, D. Antic, and J. D. Axelrod (2009)
Cold Spring Harb Perspect Biol
1, a002964
|Abstract »|Full Text »|PDF »
Small-molecule inhibitors reveal multiple strategies for Hedgehog pathway blockade.
J. M. Hyman, A. J. Firestone, V. M. Heine, Y. Zhao, C. A. Ocasio, K. Han, M. Sun, P. G. Rack, S. Sinha, J. J. Wu, et al. (2009)
PNAS
106, 14132-14137
|Abstract »|Full Text »|PDF »
Variations in Hedgehog signaling: divergence and perpetuation in Sufu regulation of Gli.
Cilium-independent regulation of Gli protein function by Sufu in Hedgehog signaling is evolutionarily conserved.
M.-H. Chen, C. W. Wilson, Y.-J. Li, K. K. L. Law, C.-S. Lu, R. Gacayan, X. Zhang, C.-c. Hui, and P.-T. Chuang (2009)
Genes & Dev.
23, 1910-1928
|Abstract »|Full Text »|PDF »
Mouse Kif7/Costal2 is a cilia-associated protein that regulates Sonic hedgehog signaling.
K. F. Liem Jr, M. He, P. J. R. Ocbina, and K. V. Anderson (2009)
PNAS
106, 13377-13382
|Abstract »|Full Text »|PDF »
Growth arrest induces primary-cilium formation and sensitizes IGF-1-receptor signaling during differentiation induction of 3T3-L1 preadipocytes.
Tubby-like protein 3 (TULP3) regulates patterning in the mouse embryo through inhibition of Hedgehog signaling.
R. X. Norman, H. W. Ko, V. Huang, C. M. Eun, L. L. Abler, Z. Zhang, X. Sun, and J. T. Eggenschwiler (2009)
Hum. Mol. Genet.
18, 1740-1754
|Abstract »|Full Text »|PDF »
Mouse hitchhiker mutants have spina bifida, dorso-ventral patterning defects and polydactyly: identification of Tulp3 as a novel negative regulator of the Sonic hedgehog pathway.
V. L. Patterson, C. Damrau, A. Paudyal, B. Reeve, D. T. Grimes, M. E. Stewart, D. J. Williams, P. Siggers, A. Greenfield, and J. N. Murdoch (2009)
Hum. Mol. Genet.
18, 1719-1739
|Abstract »|Full Text »|PDF »
Primary cilia regulate Shh activity in the control of molar tooth number.
A. Ohazama, C. J. Haycraft, M. Seppala, J. Blackburn, S. Ghafoor, M. Cobourne, D. C. Martinelli, C.-M. Fan, R. Peterkova, H. Lesot, et al. (2009)
Development
136, 897-903
|Abstract »|Full Text »|PDF »
Hedgehog signal transduction by Smoothened: Pharmacologic evidence for a 2-step activation process.
R. Rohatgi, L. Milenkovic, R. B. Corcoran, and M. P. Scott (2009)
PNAS
106, 3196-3201
|Abstract »|Full Text »|PDF »
Selective translocation of intracellular Smoothened to the primary cilium in response to Hedgehog pathway modulation.
Y. Wang, Z. Zhou, C. T. Walsh, and A. P. McMahon (2009)
PNAS
106, 2623-2628
|Abstract »|Full Text »|PDF »
The Talpid3 gene (KIAA0586) encodes a centrosomal protein that is essential for primary cilia formation.
Y. Yin, F. Bangs, I. R. Paton, A. Prescott, J. James, M. G. Davey, P. Whitley, G. Genikhovich, U. Technau, D. W. Burt, et al. (2009)
Development
136, 655-664
|Abstract »|Full Text »|PDF »
Characterization of PKD Protein-Positive Exosome-Like Vesicles.
M. C. Hogan, L. Manganelli, J. R. Woollard, A. I. Masyuk, T. V. Masyuk, R. Tammachote, B. Q. Huang, A. A. Leontovich, T. G. Beito, B. J. Madden, et al. (2009)
J. Am. Soc. Nephrol.
20, 278-288
|Abstract »|Full Text »|PDF »
Pancreatic Cancer and Precursor Pancreatic Intraepithelial Neoplasia Lesions Are Devoid of Primary Cilia.
E. S. Seeley, C. Carriere, T. Goetze, D. S. Longnecker, and M. Korc (2009)
Cancer Res.
69, 422-430
|Abstract »|Full Text »|PDF »
C2cd3 is required for cilia formation and Hedgehog signaling in mouse.
A. N. Hoover, A. Wynkoop, H. Zeng, J. Jia, L. A. Niswander, and A. Liu (2008)
Development
135, 4049-4058
|Abstract »|Full Text »|PDF »
Smoothened Signaling in Vertebrates Is Facilitated by a G Protein-coupled Receptor Kinase.
M. Philipp, G. B. Fralish, A. R. Meloni, W. Chen, A. W. MacInnes, L. S. Barak, and M. G. Caron (2008)
Mol. Biol. Cell
19, 5478-5489
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Kinome siRNA Screen Identifies Regulators of Ciliogenesis and Hedgehog Signal Transduction.
M. Evangelista, T. Y. Lim, J. Lee, L. Parker, A. Ashique, A. S. Peterson, W. Ye, D. P. Davis, and F. J. de Sauvage (2008)
Science Signaling
1, ra7
|Abstract »|Full Text »|PDF »