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Sci. Signal., 17 April 2012
[DOI: 10.1126/scisignal.2002429]

Supplementary Materials for:

A Systematic Approach for Analysis of Peptide Array Kinome Data

Yue Li, Ryan J. Arsenault, Brett Trost, Jillian Slind, Philip J. Griebel, Scott Napper, Anthony Kusalik*

*To whom correspondence should be addressed. E-mail: kusalik{at}cs.usask.ca

Supplementary Materials:

  • Methods
  • Fig. S1. Variance versus mean dependence plots before ("Raw Data") and after normalization by log2 ("Log2"), percentile normalization
    ("PNorm"), quantile normalization ("QNorm"), and transformation by variance stabilization ("VSN") with or without log2 scaling for the combined data sets in the case study.
  • Fig. S2. Histograms of relative frequencies versus intensity before ("Raw Data") and after normalization by log2, PNorm, QNorm, or VSN with or without log2 scaling for the combined data sets in the case study.
  • Fig. S3. Scatter plots of the signal intensities for monocytes treated with CpG oligonucleotides against the corresponding intensities from control cells treated with medium alone.
  • Fig. S4. Results from principal component analysis (PCA) on the intensity values from the case study.
  • References

[Download PDF]

 


Citation: Y. Li, R. J. Arsenault, B. Trost, J. Slind, P. J. Griebel, S. Napper, A. Kusalik, A Systematic Approach for Analysis of Peptide Array Kinome Data. Sci. Signal. 5, pl2 (2012).

© 2012 American Association for the Advancement of Science


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