Supplementary Materials

Supplementary Materials for:

Discovering relationships between nuclear receptor signaling pathways, genes, and tissues in Transcriptomine

Lauren B. Becnel, Scott A. Ochsner, Yolanda F. Darlington, Apollo McOwiti, Wasula H. Kankanamge, Michael Dehart, Alexey Naumov, Neil J. McKenna*

*Corresponding author. Email: nmckenna{at}bcm.edu

This PDF file includes:

  • Fig. S1. The NURSA data set page.
  • Fig. S2. Transcriptomine query form.
  • Fig. S3. Transcriptomine GREB1 Regulation Report (Pathway view).
  • Fig. S4. Transcriptomine CA12 Regulation Report (Biosample view).
  • Fig. S5. FCD window.
  • Fig. S6. Corroborating receptor promoter binding evidence from the GTRD.
  • Table S1. Receptor and small-molecule signaling pathway mappings.
  • Table S2. Cell line and tissue biosample mappings to physiological systems and organs.
  • Table S3. Examples of animal and cell models and clinical data sets.
  • Table S4. Experiment naming convention.
  • Table S5. Nonstandard abbreviations in NURSA experiment names.
  • Legend for data file S1

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Technical Details

Format: Adobe Acrobat PDF

Size: 1.46 MB

Other Supplementary Material for this manuscript includes the following:

  • Data file S1 (Microsoft Excel format). Use Case Query parameters and search results.

[Download Data file S1]


Citation: L. B. Becnel, S. A. Ochsner, Y. F. Darlington, A. McOwiti, W. H. Kankanamge, M. Dehart, A. Naumov, N. J. McKenna, Discovering relationships between nuclear receptor signaling pathways, genes, and tissues in Transcriptomine. Sci. Signal. 10, eaah6275 (2017).

© 2017 American Association for the Advancement of Science