OQL data types and functionality.
| Data type | Keyword | Code | Description | Example |
| Copy number | CNA | AMP | Show amplified cases. | CCNE1: AMP; CCNE1: CNA > GAIN; CCNE1: GAIN AMP |
| HOMDEL | Show homozygously deleted cases. | |||
| GAIN | Show single copy gained cases. | |||
| HETLOSS | Show heterozygously deleted cases. | |||
| Mutations | MUT | MUT | Show mutated cases. | CCNE1: MUT |
| MUT = x | Show cases with specific mutations or mutation types. | BRAF: MUT = V600E; TP53: MUT = MISSENSE; TP53: MUT = NONSENSE; TP53: MUT = NONSTART; TP53: MUT = NONSTOP; TP53: MUT = FRAMESHIFT; TP53: MUT = INFRAME; TP53: MUT = SPLICE; TP53: MUT = TRUNC | ||
| mRNA/miRNA expression z scores | EXP | EXP < x | Show all underexpressed cases, less than x standard-deviations from the mean. | TP53: EXP > 1.5 |
| EXP > x | Show all overexpressed cases, greater than x standard-deviations from the mean. | |||
| Protein-level z scores | PROT | PROT < x | Show all protein-level underexpressed cases, less than x standard from the mean. | ERBB2: PROT < –2 |
| PROT > x | Show all protein-level overexpressed cases, greater than x standard from the mean. |